CFB PSY04 Aetiology Of Psychiatric Disorders
The aetiology of psychiatric disorders encompasses the interplay of genetic, neurobiological, psychological, and sociocultural factors that contribute to the development and manifestation of mental illness.
Aetiology of Psychiatric Disorders
This lecture, delivered by Professor Pak C. Sham (Department of Psychiatry, HKU) as part of the MBBS IV Clinical Foundation Block (CFB PSY04), asks a question that cuts across psychiatric practice: Why do people develop mental disorders? For most disorders, the answer is multifactorial and probabilistic rather than a single necessary or sufficient cause.
Learning Objectives [1]
1. Appreciate the concepts, complexities and clinical relevance of aetiology in mental disorders 2. Knowledge of the genetic factors involved in mental disorders 3. Knowledge of the environmental factors involved in mental disorders
Part 1: General Principles of Aetiology
Aetiology is the study of the causes of a disorder. [1]
This seems simple, but the lecturer immediately emphasises that causes are typically complex. He uses two illustrative examples:
| Example | "Cause" | Complexity |
|---|---|---|
| Phenylketonuria (PKU) | Phenylalanine hydroxylase mutation (single gene, AR) | Even this "simple" genetic cause can be prevented by dietary restriction of phenylalanine → environment modifies genetic outcome |
| COVID-19 | Coronavirus (single agent) | Host immunity, behaviours affecting exposure → not everyone exposed gets sick |
Key teaching point: Even disorders with a single identifiable cause still involve multiple factors at the individual level. Different factors [are] involved in different patients. [1]
| Level | Goal | Example |
|---|---|---|
| Population level | Reduce aetiological factors → reduce disease incidence (public health) | Reducing alcohol consumption in population → fewer cases of alcohol-related psychosis |
| Individual level | Identify and eliminate specific contributory factors → halt deterioration, promote recovery, prevent relapse | Addressing childhood trauma in a patient with borderline personality disorder |
| Family level | Reduce recurrence risk in family members | Genetic counselling in familial Alzheimer's |
This is a critical framework. The lecture classifies aetiological factors along three axes:
Classification according to:
- Temporal relationship: Distal (Remote) / Proximal (Recent); Predisposing / Precipitating / Maintaining
- Nature of factor: Intrinsic / Extrinsic; Biological / Psychosocial; Genetic / Environmental
- Relationship to other disorders: Primary / Secondary
The Predisposing / Precipitating / Maintaining Framework
This is THE framework used in psychiatric formulation and is directly tested in SAQs [3]:
| Category | Definition | Clinical Meaning | Examples |
|---|---|---|---|
| Predisposing | Background factors that increase vulnerability (usually distal/remote) | "Why is this person at risk?" | Genetics, personality traits (neuroticism), childhood adversity, family history |
| Precipitating | Proximal events that trigger onset of illness | "Why now?" | Recent bereavement, job loss, substance use, physical illness |
| Maintaining (Perpetuating) | Factors that keep the illness going once it starts | "Why hasn't this resolved?" | Ongoing litigation (secondary gain), poor social support, continued substance use, high expressed emotion in family |
Exam Trap
A common mistake is confusing predisposing and precipitating factors. The 2017 SAQ Q10 specifically asks you to separate these for a patient with chronic pain and depression. Remember: predisposing = long-standing vulnerability; precipitating = the trigger event; perpetuating = what keeps it going [3].
The lecture references Robert Burton's Anatomy of Melancholy (1621) to show that early writers proposed multiple explanations: Burton separated supposed “supernatural” causes from “natural” congenital/hereditary, bodily, and adverse social causes (including education, fear, loss of liberty, and poverty). This is history of ideas, not a modern causal taxonomy: supernatural explanations and Burton's period language are not evidence-based clinical accounts.
Most disorders are caused by the complex interplay of multiple genetic and environmental factors — Multifactorial [1]
A minority of psychiatric disorders have simple (single-factor) causality:
| Type | Mechanism | Example |
|---|---|---|
| Chromosomal abnormalities — Aneuploidy | Extra/missing chromosome | Down syndrome (trisomy 21) → intellectual disability |
| Chromosomal abnormalities — Deletion/Duplication | Submicroscopic chromosome segment change | 22q11.2 deletion syndrome → schizophrenia, intellectual disability, autism |
| Single-gene — Dominant | One copy sufficient | Early-onset familial Alzheimer's (APP, PSEN1, PSEN2) |
| Single-gene — Recessive | Two copies needed | Phenylketonuria |
| Single-gene — X-linked | Gene on X chromosome | Fragile X syndrome |
| Infection/toxin/injury | Direct organ damage | Herpes encephalitis → psychosis; alcohol → Korsakoff syndrome |
But the vast majority of psychiatric disorders are multifactorial — meaning many genes of small effect plus environmental exposures combine to produce disease.
Just because something is associated with a disorder doesn't mean it causes it. The lecture outlines the methodology:
Strongest demonstration in an appropriate setting:
- Putative cause associated with disorder
- Removing putative cause prevents disorder (interventional study)
Exclusion of confounding via stratified analysis and regression models
Bradford Hill Criteria:
- Strong and consistent association
- Correct temporal relationship
- Dose-response relationship
- Biologically plausible mechanisms
Causal modelling including Mendelian randomization [1]
Mendelian randomization (MR) uses genetic variants as instruments to test whether an exposure may causally affect an outcome. It can reduce some conventional confounding and reverse causation, but it is not automatically confounding-free: the instrument must predict the exposure, must not share causes with the outcome, and must affect the outcome only through the exposure. Population stratification, assortative mating, horizontal pleiotropy, and selection can violate these assumptions. Likewise, the Bradford Hill considerations support causal reasoning but are not a mechanical checklist, and an intervention result depends on whether the intervention truly and specifically changes the putative cause.
The same clinical disorder can have different aetiological subtypes.
The lecture uses Alzheimer's disease as the prime example:
| Subtype | Genetics | Mechanism |
|---|---|---|
| Familial/Monogenic (early onset, < 65y, < 1%) | APP, PS1 (PSEN1), PS2 (PSEN2) mutations | Highly penetrant single-gene mutations |
| Sporadic/Multifactorial (late onset, > 65y) | APOE, CLU, CR1 polymorphisms | Multiple common variants of small effect |
Sporadic AD is also associated with PICALM [1]
The lecture includes a diagram of the amyloid-processing pathway linking familial and sporadic AD genetics to a common downstream cascade:
(Diagram reproduced in the lecture from Van Es & van den Berg, 2009.) [1]
This is a useful historical, amyloid-centred schematic, not a complete modern model of Alzheimer disease. In particular, PS1 and PS2 in the slide mean PSEN1 and PSEN2; APOE, CLU, PICALM, and CR1 are susceptibility loci rather than deterministic diagnoses, and downstream neurodegeneration is more complex than a single linear amyloid cascade.
High Yield — 2025 MCQ Q20
The 2025 Fourth Summative MCQ directly asked: "What is the MOST COMMON gene contributing to the risk of developing Alzheimer's disease?" Answer: APOE gene [5]. This maps directly to the lecture's distinction between rare monogenic (APP, PSEN1, PSEN2 — these are the most common cause of familial/early-onset AD) vs common multifactorial (APOE — the most common risk gene for sporadic/late-onset AD).
This is the fundamental quantitative model for understanding multifactorial diseases:
All-or-none traits (diseases) can be modelled as arising from an underlying continuous liability; when liability exceeds a threshold, disease develops. [1]
The bell curve on the slide is a modelling assumption: many small genetic and environmental contributions can motivate an approximately normal latent liability. It is not proof that a measurable biological quantity called “liability” is literally Gaussian, and the threshold is a model parameter rather than a sharp natural boundary.
Why does this matter clinically?
- It explains why most people in the population don't get the disease (they're below threshold)
- It explains why relatives of affected individuals have higher risk (they share aetiological factors, so their liability distribution is shifted right)
- It explains the continuum between "normal" and "pathological" — the threshold is somewhat arbitrary
This is the clinical application of the liability-threshold model:
Liability = Diathesis (vulnerability) + Stress (proximal factors) There is a negative correlation between diathesis and stress in patients (collider bias). [1]
What this means in plain English:
- To cross the disease threshold, you need some combination of vulnerability (diathesis) and trigger (stress)
- Patients with high diathesis (e.g., strong family history, multiple risk genes) need less stress to become ill
- Patients with low diathesis need more stress to become ill
- When you look only at patients (i.e., people who crossed the threshold), you see an artificial negative correlation between diathesis and stress — this is called collider bias (selecting on the outcome creates a spurious association between the causes)
Clinical implication: When taking a history, if a patient has strong family history (high diathesis), don't be surprised if the precipitating stressor seems trivial. Conversely, a massive trauma can trigger illness even in someone with no family history.
Mediators are the mechanisms through which aetiological factors produce the disorder (A → M → D pathway):
Biological mediators: stress reactivity, brain connectivity Psychological mediators: cognitive function, personality, resilience Social mediators: lifestyle, support network
Potential biomarkers ("endophenotypes") — measurable traits that lie between genotype and clinical phenotype Potential points for intervention [1]
Why do mediators matter? Because even if you cannot change an upstream exposure, a genuine mediator may be an intervention point. However, an associated intermediate measure is not necessarily a causal mediator. Distinguish it from a confounder (a common cause of exposure and outcome) and a moderator (something that changes the size or direction of an effect); changing an associated marker does not by itself prove that the clinical outcome will change.
Comorbidity [is] more frequent than expected by chance. [1]
The lecture presents three possible explanations (from the Johansson et al. 2013 diagram):
| Model | Explanation | Example |
|---|---|---|
| A → B | One disorder directly causes another | Depression → substance abuse (self-medication) |
| A ← → B | Bidirectional causation | Anxiety ↔ insomnia |
| C → A and C → B | Shared underlying cause | Shared genetic variants cause both schizophrenia and bipolar disorder |
The lecture slide also presents prevalence data for depression-anxiety comorbidity (Johansson et al. 2013) [1]:
| Measure | Depression only | Anxiety only | Comorbid | Total Depression | Total Anxiety |
|---|---|---|---|---|---|
| Clinically significant symptoms | 2.4% | 6.1% | 8.3% | 10.8% | 14.7% |
| Formal diagnoses (MDD / GAD) | 2.1% | 5.6% | 3.1% | 5.2% | 8.8% |
Key point: The overlap is large — in this dataset, most participants with clinically significant depression also had clinically significant anxiety (8.3% comorbid out of 10.8% total depressed). Shared causes are one explanation, but symptom/measurement overlap, one disorder influencing the other, and selection into a clinical sample can also contribute.
Environmental exposures influenced by behaviour of individual or parents. Behaviours partially genetically determined → gene-environment correlation. [1]
This is subtle but important. It means that what we measure as "environmental" exposure may partly be genetically driven:
- Example 1: Exposure to carcinogens in tobacco smoke is an "environment," but the behaviour of smoking is partly genetic (genes affecting nicotine dependence)
- Example 2: Exposure to social adversity associated with a substance use disorder — liability to the substance-use behaviour may itself be partly heritable
Why this matters: It complicates aetiological research. When we find that "childhood adversity" is associated with depression, some of that association may be because parents with psychiatric genetic risk create more adverse environments for their children (passive gene-environment correlation).
Three types of gene-environment correlation (from genetics theory):
- Passive: Parents provide both genes and environment (e.g., depressed parent provides depression-risk genes AND an emotionally neglectful home)
- Evocative: Child's genetically influenced behaviour evokes environmental responses (e.g., a temperamentally difficult child provokes harsh parenting)
- Active: Individual selects environments based on genetically influenced preferences (e.g., sensation-seeking genes → choosing risky peer groups)
Environmental factors increasing disease risk especially in those with specific genetic susceptibility. [1]
This is different from correlation — here the effect of the environment depends on the genotype:
| Example | Gene | Environment | Interaction |
|---|---|---|---|
| Melanoma | Pale skin genes | Sunlight exposure | Sunlight → melanoma risk especially in pale-skinned individuals |
| Depression | High neuroticism score | Social adversity | Social adversity → depression risk especially in neurotic individuals |
Statistically: Gene-environment interaction means the combined effect of gene + environment is greater (or less) than what you'd predict from adding their individual effects.
Interaction is scale-dependent: a pattern can appear on an additive risk scale but not a multiplicative odds scale (or vice versa), and exposure/genotype measurement, population structure, and multiple testing can produce false positives. Replication and a pre-specified model are essential.
History taking: Family/Development, Personality/Lifestyle/Habits, Stressors (acute and chronic), Social resources Formulation: Predisposing/precipitating/maintaining factors + protective factors Management: Promote understanding, reduce contributing factors, strengthen protective factors [1]
The slide's genogram is a practical family-history map. Common symbols are: square = male, circle = female, diamond = sex/gender unspecified; a diagonal slash = deceased; an arrow marks the index person; connecting lines represent partnerships and offspring; paired lines may mark consanguinity; broken partnership lines mark separation/divorce; branching from one point identifies twins; and shading or labels record a condition. Conventions vary, so include a legend. A genogram shows family aggregation—not genetic determinism—and sensitive family information should be recorded with consent, relevance, and confidentiality in mind.
Part 2: Genetic Factors
The lecture traces the historical arc:
- 19th century: Familial/social/racial "degeneracy" → stigmatization, eugenics, even genocide
- Post-WWII: Rejection of eugenics → rise of psychodynamic/psychological theories (Freud)
- Modern era: Scientific methods to disentangle nature from nurture
Freud: repression of early traumatic memories → psychoanalysis recalls memories into consciousness (catharsis). "Exonerates" patient as victim of external circumstances. Parents/Adults responsible for "traumatizing" children. [1]
The deck's older examples require context:
- John Haslam (1798) described a mother and father with severe “melancholia” as an early observation of familial aggregation. The terminology, asylum setting, and coercive care are historical; a two-person pedigree cannot distinguish genes from shared environment.
- The eugenic “burden” and Nazi propaganda images show how claims about heredity were used for stigma, forced sterilisation, and genocide. These practices were scientifically invalid and grave human-rights abuses. Modern psychiatric genetics must be voluntary, non-discriminatory, consent-based, and attentive to uncertainty.
- The photograph labelled “Anna O” refers to Bertha Pappenheim, treated by Josef Breuer rather than being Freud's own patient. Psychoanalytic repression/catharsis is historically influential, but recovered-memory claims and parent-blaming are not established causal explanations. Childhood trauma is clinically important without requiring this historical theory.
Resolving Nature from Nurture [1]
Two key study designs:
Genetic transmission: Risk in biological relatives > Risk in adoptive relatives Environmental sharing: Risk in biological relatives < Risk in adoptive relatives [1]
Logic: Adoptees share genes with biological relatives and much of the rearing environment with adoptive relatives. Higher risk in adoptees whose biological relatives were affected supports genetic contribution, but does not “confirm genetic transmission” on its own: selective placement, prenatal exposures, diagnostic practice, contact with biological relatives, and restricted adoptive environments can bias estimates.
The lecture presents the Heston (1966) adoption study data directly [1]:
| Variable | Control (n = 50) | Experimental (n = 47) | Exact Probability |
|---|---|---|---|
| Schizophrenia (morbid risk = 16.6%) | 0 | 5 | 0.024 |
| “Mental deficiency” (historical label; IQ < 70) | 0 | 4 | 0.052 |
| “Sociopathic personality” (historical label) | 2 | 9 | 0.017 |
| “Neurotic personality disorder” (historical label) | 7 | 13 | 0.052 |
| > 1 year in penal/psychiatric institution | 2 | 11 | 0.006 |
| Mean IQ | 103.7 | 94.0 | — |
Interpretation: Foster-home-reared children of mothers diagnosed with schizophrenia had more adverse outcomes in this small historical sample. It is an important early adoption study, but its 1960s diagnoses, language, sample size (47 exposed and 50 controls), and possible prenatal/placement confounding make it supporting evidence rather than a definitive modern causal estimate.
Genetic transmission: Similarity between MZ twins > similarity between DZ twins Environmental sharing: Similarity between MZ twins = similarity between DZ twins [1]
Logic: MZ twins share nearly all segregating DNA, whereas DZ twins share about half on average. Greater MZ than DZ concordance supports genetic influence under the model's assumptions; it is not true that their environments are necessarily identical. The classical equal-environments assumption, ascertainment, diagnostic reliability, and gene–environment interplay matter.
Heritability = Relative contribution of genetic factors (0-1) [1]
2 × (MZ − DZ) is a rough teaching heuristic. Formal estimates for a dichotomous diagnosis use a liability-threshold or other variance-components model and depend on assumed prevalence, ascertainment, and model specification.
Understanding Heritability
Heritability does NOT mean “how genetic” a disorder is in an individual. It estimates the proportion of variation in a defined population, environment, and period attributable to genetic differences under a specified model. It can change across populations and time; it does not imply inevitability, identify a cause in one patient, or measure how responsive a condition will be to treatment. A uniform environment can raise the proportion of remaining variance attributed to genes without making genes more biologically important.
The lecture reproduces classic studies summarised by Gottesman and Shields (1976). Across the displayed studies, MZ concordance is roughly 35–58% and DZ concordance roughly 9–26%, depending on study and calculation. Probandwise concordance asks the probability that a co-twin is affected given an affected proband; pairwise concordance is the proportion of affected pairs among all pairs. They are not interchangeable.
| Relationship | Concordance for Schizophrenia |
|---|---|
| MZ twins | ~35–58% in the displayed historical studies |
| DZ twins | ~9–26% in the displayed historical studies |
| Siblings | ~10% |
| Parent-offspring | ~6% |
| General population | ~1% |
The important inference is MZ > DZ, supporting substantial genetic influence, while MZ is far below 100%, demonstrating non-determinism and the importance of non-shared factors and measurement. Modern estimates often place schizophrenia liability heritability around 80%, but the exact value is population- and method-specific.
The lecture's 2017 textbook graphic gives the following illustrative estimates—not a timeless ranking:
| Disorder | Approximate Heritability | Key Point |
|---|---|---|
| Bipolar disorder | ~85% | Highest on the lecture slide chart [1] |
| Schizophrenia | ~81% | Strong genetic loading [1] |
| Anorexia nervosa | ~60% | Notably heritable eating disorder [1] |
| Major depressive disorder | ~37% | Lower than schizophrenia/bipolar in this source [1] |
| Generalised anxiety disorder | ~28% | Lower than depression on lecture chart [1] |
The slide then links high heritability with biological intervention and low heritability with psychosocial intervention. Treat that as a historical heuristic, not a treatment rule. Heritability does not tell us which treatment works: phenylketonuria is genetic yet diet-responsive, while highly heritable psychiatric disorders benefit from psychosocial as well as biological care. Treatment should follow clinical evidence, patient needs, and formulation—not a heritability percentage.
Interpret the slide, not the person
For this lecture graphic, bipolar disorder and schizophrenia have higher illustrative estimates than major depression and generalised anxiety disorder. Do not extrapolate the chart to an individual, infer prognosis, or choose treatment from it; estimates depend on phenotype, population, environment, and statistical method.
Finding Specific Genetic Loci [1]
Gene-mapping at the whole-genome scale:
- Genome-wide linkage scans since ~1995 — LINKAGE: tracks Transmission, Long-range
- Genome-wide association studies (GWAS) since ~2005 — ASSOCIATION: Presence/Absence, Short-range [1]
Linkage studies look at how disease tracks with chromosomal regions within families (useful for rare, high-penetrance variants). GWAS tests millions of common SNPs across the genome in large case-control samples.
Common (> 5%) variants: Genome-wide association studies (GWAS) Rare (< 1%) variants: Genome sequencing studies (Whole Exome / Whole Genome) [1]
The lecture traces the enabling technologies: Human Genome Project → HapMap Project → genotyping arrays + shotgun DNA sequencing. The frequency labels leave a low-frequency interval (about 1–5%). Whole-exome sequencing covers mainly protein-coding exons; whole-genome sequencing surveys coding and non-coding sequence more broadly. A GWAS locus is an associated region in linkage disequilibrium—not automatically the causal variant, causal gene, or a drug target—and ancestry imbalance limits portability.
Nature 511, 421-427 (24 July 2014) — the landmark PGC2 study identified 128 independent associations spanning 108 loci for schizophrenia [1]
GWAS for depression (Howard et al. 2019) identified 103 significant loci and 269 significant genes [1]
These are dated snapshots from the slide. A 2022 Psychiatric Genomics Consortium study of 76,755 people with schizophrenia and 243,649 controls reported associations at 287 loci and prioritised 120 genes [7]. A 2025 multi-ancestry major-depression study (688,808 cases; 4,364,225 controls) reported 697 associations at 635 loci, 293 of them novel [8]. Larger counts do not make either disorder genetically deterministic; phenotype heterogeneity and representation across ancestries remain important.
The Manhattan plots encode chromosome position on the x-axis and −log10(P) on the y-axis; points above the horizontal line meet the conventional genome-wide significance threshold (about P < 5 × 10⁻⁸). The prominent chromosome 6 schizophrenia signal includes the complex MHC region. A peak identifies a region for follow-up, not the mechanism by itself.
Biological mechanisms: key molecules or biological pathways → novel treatment targets → heterogeneity (precision/stratified medicine) Prediction: disease risk, prognosis, treatment response [1]
These are research aims rather than current bedside promises. Associations can nominate pathways and targets, but individual prediction of diagnosis, prognosis, or treatment response remains limited.
The lecture specifically names these gene categories and loci:
Dopamine: DRD2 Glutamate: GRM3, GRIN2A, SRR Calcium channels: CACNA1C, CACNA1I, CACNB2 [1]
Why these matter clinically:
- DRD2: convergence between an associated locus and a major antipsychotic target is biologically notable, but does not validate a single complete “dopamine hypothesis” or establish that the associated variant changes receptor coding.
- Glutamatergic and calcium-channel loci: support further mechanistic work, but locus-to-gene assignment and therapeutic translation require functional evidence. They do not explain why a particular medicine works in an individual.
The PGC pathway analysis (slide 33) identified three major pathway clusters implicated in schizophrenia:
| Pathway Cluster | Key Genes in Co-expression Network |
|---|---|
| Synapse | DLG4, SHANK2, HOMER2, GRIN2A, GRM5, CACNA1A, CACNA1B, HTR2A |
| Histone methylation | HDAC4, SUV420H1, ATF7IP, KAT2B |
| Immune and neuronal/neurotrophic | NOTCH1, NOTCH2, NOTCH3, FGFR1, ERBB3, MAPK9, MAPK10, MAPK13 |
Teaching point: The slide's pathway analysis groups the top 50 pathways (q < 0.1) into synaptic, histone-methylation, and immune/neurotrophic clusters. Such enrichment and co-expression networks are hypothesis-generating group-level analyses; they do not show that every listed gene is causal or that “immune schizophrenia” can be diagnosed in an individual.
The lecture shows co-expression networks of genes in top pathways with q < 0.1, illustrating that schizophrenia-associated genes cluster in specific biological pathways related to synaptic function, neurotransmission, and neurodevelopment.
Polygenic risk score: Predicts person's disease risk by combining effects of genotypes at multiple loci → Risk stratification → Clinical implications in future [1]
A PRS sums weighted effects across many variants. Psychiatric PRS remains primarily a research tool: the International Society of Psychiatric Genetics and Royal College of Psychiatrists state that current scores lack sufficient absolute-risk and treatment-prediction utility for routine psychiatric practice, and performance varies substantially by genetic ancestry [9][10].
The lecture illustrates PRS utility with a graph of odds ratios by polygenic-risk decile across three samples (Denmark, MGS, Sweden) [1]:
- Individuals in the lowest decile (decile 1) have an odds ratio of ~1 (baseline)
- Odds ratios rise progressively with higher deciles
- In the highest decile (decile 10), odds ratios reach approximately 8 (Denmark), 15 (Sweden), and 20 (MGS)
This shows relative odds between extreme groups in those research samples, with wide and overlapping distributions. It does not mean a person in the top decile has a 20-fold absolute probability, nor does it diagnose schizophrenia. Even a strong top-versus-bottom odds ratio may have limited positive predictive value for a condition with low population prevalence.
Chromosome 22q11.2 deletion syndrome (historically “velocardiofacial/DiGeorge syndrome”):
- Copy number variant (CNV)
- Frequency ~1/4000 live births
- 22-31% develop SZ or schizoaffective disorder
- 1.1% of SZ patients have the deletion [1]
The preferred umbrella name is 22q11.2 deletion syndrome (22q11.2DS). The phenotype is highly variable and may include congenital cardiac disease, palatal abnormalities, hypocalcaemia from hypoparathyroidism, immune dysfunction, developmental/learning difficulties, autism-spectrum features, and later psychotic illness. GeneReviews estimates schizophrenia in about 25% of affected adults [11]. The facial photographs on the slide illustrate variability and must never be used to diagnose the deletion; clinical suspicion should lead to appropriate genetic testing, counselling, and multisystem surveillance.
The adjacent rare-CNV plot makes a second point: some deletions or duplications have much larger relative effects than common GWAS variants (for example 22q11.2 deletion, NRXN1 deletion, 15q13.3 deletion, 3q29 deletion, or 16p11.2 duplication in the displayed dataset). They remain rare, pleiotropic, and incompletely penetrant, so a carrier's outcome cannot be predicted from an odds ratio alone.
Risk CNVs implicate synaptic proteins:
- CNVs that do not overlap exons: no significant enrichment
- Enrichment depends on how many genes CNVs affect (OR 1.21 per gene)
- Copy number loss (OR 1.40) more enriched than copy number gains (OR 1.12)
Significant enrichment in:
- Presynaptic adhesion molecules: NRXN1, NRXN2
- Post-synaptic scaffolding proteins: DLG1, DLG2, DLGAP1, SHANK1, SHANK2
- Glutamatergic ionotropic receptors: GRID1, GRID2, GRIN1, GRIA4
- Dystrophin and synaptic partners: DMD, DTNB, SNTB1, UTRN [1]
Interpretation: The displayed enrichment converges on synaptic structure and function and motivates a synaptic-development hypothesis. It is a group-level pathway signal, not a molecular diagnosis for an individual.
This is an elegant evolutionary genetics argument:
Reduced fecundity in schizophrenia:
- Males FR = 0.23 (95% CI 0.23-0.24)
- Females FR = 0.47 (95% CI 0.46-0.48) (Power et al, JAMA 2013 — Swedish cohort of 2.3M) [1]
The puzzle: If schizophrenia has such high heritability (~80%) and reduces reproductive fitness so dramatically, why hasn't natural selection eliminated the risk alleles?
Possible contributors:
- De novo mutations continuously replenish high-risk alleles before selection can eliminate them
- Rate of de novo mutations positively associated with paternal age [1]
- Increased risk of schizophrenia in individuals born to older fathers [1]
- Alternative explanation: genetic predisposition associated with later fatherhood (reverse causation — people with schizophrenia-risk genes may have social difficulties that delay fatherhood) [1]
The plot's mutation count rises with paternal age (about 70 de novo mutations around age 33 in the displayed data), but an epidemiological paternal-age association is not proof that new mutations caused a given person's illness. Confounding and inherited liability can contribute, the absolute risk for any family remains small, and this evidence should not be used to blame parents.
22q11.2 deletion syndrome associated with intellectual disability, autism AND psychosis [1]
Twin studies showed shared genetic aetiology between:
- Schizophrenia, mania and schizoaffective disorder (Cardno et al, 2002)
- Bipolar affective disorder and unipolar depression (McGuffin et al, 2003)
- Anxiety and depression (Kendler et al, 1992) [1]
The lecture illustrates shared genetic aetiology using a bivariate twin model diagram [1]. For two traits (X and Y) measured in twins, variance is decomposed into:
- A (additive genetic), C (shared environment), E (non-shared environment)
- Cross-trait correlations r_A, r_C, and r_E quantify the degree to which the same genetic, shared-environmental, and non-shared-environmental factors influence both traits
- A high r_A (genetic correlation) between two disorders indicates substantial shared genetic aetiology — this is the statistical basis for the twin-study findings listed above
The diagram's arrows from latent A, C, and E factors to traits X and Y represent variance components; the curved links rA, rC, and rE represent cross-trait correlations. A genetic correlation describes overlap at population level. It does not mean two diagnoses are identical or predict that a person with one disorder will develop the other.
GWAS confirm genetic overlap:
- Substantial shared SNP effects across psychiatric disorders (coheritability)
- Shared genetic aetiology partially explains excess comorbidity
- Challenge to the Kraeplinian dichotomy (the traditional distinction between schizophrenia and bipolar disorder)
- Common variants do not entirely account for heritability estimated from twin studies ("missing heritability") [1]
High Yield — Kraeplinian Dichotomy
The Kraeplinian dichotomy (Emil Kraepelin, 1899) separated "dementia praecox" (schizophrenia) from "manic-depressive insanity" (bipolar disorder) as fundamentally different diseases. GWAS data showing substantial genetic overlap between these disorders challenges this traditional distinction. This is a favourite exam point [1].
“Missing heritability” refers to the gap between classical family/twin estimates and variance captured by measured variants in a given analysis. Rare variants, incompletely tagged common variants, structural variation, phenotype and measurement differences, and modelling assumptions may contribute. Gene–environment interaction can affect phenotypic variance but should not simply be relabelled as unexplained genetic variance; epigenetic findings likewise require separate causal interpretation.
Part 3: Environmental Factors
Schizophrenia associated with obstetric history:
- Birth in winter months / urban areas
- Fetal growth retardation
- Fetal perinatal hypoxia
- Prenatal adversity:
- Malnutrition: 1944 Dutch famine, and 1958 Chinese famine
- Infections: 1957 influenza pandemic
Proposed disturbance of development that may increase later psychiatric risk [1]
Interpretation: season of birth, urbanicity, fetal growth restriction, hypoxia, famine cohorts, and historical influenza exposure are mostly observational, modest, and non-specific associations. Proposed mechanisms include infection/inflammation, nutrition, vitamin D, placental function, and hypoxic injury, but residual socioeconomic, temporal, and healthcare confounding remains. Do not turn these population signals into a causal story—or blame—about an individual pregnancy.
Why urban birth? Possibly related to higher rates of infection, overcrowding, pollution, and social stress.
Males more prone to intellectual disability, autism, conduct disorder, and substance use disorder Females more prone to childhood emotional disorder, anxiety and depression Age-of-onset of schizophrenia earlier in males than females [1]
The lecture includes National Comorbidity Survey (USA) data illustrating gender differences [1]:
| Disorder Category | Women | Men |
|---|---|---|
| Any psychiatric disorder | 47.3% | 48.7% |
| Depressive disorders | 23.9% | 14.7% |
| Anxiety disorders | 30.5% | 19.2% |
| Substance use disorders | 17.9% | 35.4% |
Key pattern in this historical US binary dataset: overall lifetime prevalence was similar, while depressive/anxiety diagnoses were more common among women and substance-use diagnoses among men; average schizophrenia onset was earlier among men. The slide labels this “gender,” but sex-related biology and gendered exposure, help-seeking, detection, and diagnostic bias are distinct and may interact. Binary averages do not describe every individual and may miss or misclassify transgender and gender-diverse people. They also do not establish a single hormonal mechanism; the oestrogen hypothesis is one proposed contributor, not a complete explanation.
Risk factors:
- Parental loss (death / divorce / separation)
- Maltreatment (Physical / Emotional)
- Sexual abuse
Associated disorders:
- Emotional disorders, Conduct disorders (Delinquency)
- Anxiety and depression, PTSD
- Substance use disorders
- Borderline personality disorder
- Schizophrenia [1]
The image is sometimes described as “Bowlby: Attachment,” but it actually depicts Harry Harlow's rhesus-monkey surrogate-mother experiments (cloth versus wire surrogate). These ethically unacceptable animal experiments influenced attachment thinking but are not Bowlby's clinical observations and cannot be directly translated into a deterministic human diagnosis. In people, maltreatment and disrupted caregiving are associated with later mental-health risk, but outcomes vary and safe, stable, supportive relationships are protective [12].
Early adversity has wide-ranging effects (e.g. on stress response and neuroplasticity), partially mediated by epigenetic reprogramming, which increases psychiatric disorder risk [1]
The proposed mechanism (from the Li et al. 2020 schematic) [1]: early adversity may alter HPA-axis regulation, monoamine/BDNF signalling, and plasticity through interacting endocrine, neural, immune, and epigenetic processes. Much of the directional pathway detail comes from animal models or observational human tissue studies. Peripheral methylation is not direct evidence of the same change in living human brain; epigenetic marks are dynamic, and these data do not prove biological destiny or transgenerational inheritance.
The lecture diagram details two parallel pathways affected by early life stress:
HPA Axis Pathway:
- Hypothalamic CRH/AVP signal to pituitary POMC/ACTH, which stimulates adrenal glucocorticoid production; glucocorticoid-receptor feedback regulates the circuit.
- The figure proposes altered GR feedback after early stress. Direction and timing vary across conditions; chronic stress can be associated with hyper- or hypocortisolism, not invariably raised cortisol.
Serotonin / BDNF / Neuroplasticity Pathway:
- The diagram links serotonin transport/metabolism (
5-HTT,MAO,5-HT) with BDNF–TrkB signalling and downstream AKT/CaMK/ERK pathways involved in plasticity. - These arrows summarise candidate mechanisms; they are not a validated patient-level biomarker panel.
Epigenetic example: studies have reported associations between early adversity and methylation near NR3C1, a glucocorticoid-receptor gene, alongside animal work on caregiving and stress responses. These are important mechanistic clues but do not establish a universal, irreversible pathway from maltreatment to adult illness.
Chronic unremitting stress may dysregulate HPA, neural, immune, and metabolic function [1]
Immigrants:
- 2-4 fold increased rates of schizophrenia
- Greater effect in second-generation migrants
- Greater effect in areas with lower density of migrants
- Social exclusion [1]
Interpretation: higher psychosis incidence in some migrant and minoritised populations—often stronger in later generations and lower own-group ethnic density—cannot be attributed to migrant status as an intrinsic trait. Social exclusion is one hypothesis; discrimination and structural racism, socioeconomic disadvantage, trauma, neighbourhood context, service access, and diagnostic processes are also relevant. Dopamine “sensitisation” remains a proposed mechanism rather than a settled single explanation.
Recent adverse life events (e.g. bereavement, divorce, injury or illness, loss of employment or wealth, failure or humiliation) may precipitate episodes in vulnerable people [1]
Temporal association does not make an event necessary or sufficient: reverse causation (prodromal illness generating stress), recall, and selection can contribute. The “six-fold” figure in the senior note should therefore be treated as a source-specific historical estimate rather than a portable individual risk.
Ability to cope with stress and recover from stressful situations Increased by repeated brief parental separations / appropriate challenges during childhood Partly mediated by greater self-efficacy and coping skills Individual differences in optimal level of challenges [1]
The “brief parental separations” statement reflects stress-inoculation research, much of it animal or experimental, and is not a parenting or clinical recommendation. Children should never be deliberately separated or exposed to adversity to “build resilience.” In human care, resilience is dynamic and contextual: manageable age-appropriate challenges with safe, stable relationships and support may help coping and self-efficacy, while maltreatment is harmful [12]. Difficulty recovering is not a personal failure.
Good social support:
- Protective against the onset of mental disorders
- Helps maintain remission from illness
High expressed emotions (EE) in family:
- Hostility, over-involvement, critical comments
- Increase risk of relapse of schizophrenia [1]
Expressed emotion (EE) is a research construct commonly assessed through criticism, hostility, and emotional over-involvement. Higher EE predicts relapse at group level, but the relationship is bidirectional and must not be used to blame families coping with severe illness. NICE recommends collaborative family intervention for families in close contact with a person with psychosis or schizophrenia; its purpose is support, education, coping, negotiated problem-solving, and relapse reduction—not assigning fault [13].
Prolonged and heavy usage of psychoactive substances increase mental disorder risk:
- Alcohol: Psychosis, Dementia
- Amphetamines: Psychosis
- Cannabis: Psychosis [1]
Distinguish intoxication or withdrawal, a substance-induced psychiatric disorder, and a primary disorder whose course is worsened by substance use. Amphetamines and cannabis can precipitate psychotic symptoms; alcohol can cause intoxication/withdrawal syndromes, alcohol-induced psychosis, and neurocognitive harm. Associations are also bidirectional because symptoms can influence use. For cannabis, the EU-GEI case-control study found greater psychotic-disorder odds with daily and high-potency exposure [14], but an observational odds ratio is not deterministic proof for an individual. Ask non-judgmentally about timing, quantity/frequency, potency, other substances, dependence, and change in symptoms during abstinence.
Gene-Environment Interaction: Specific Examples [1]
Monoamine oxidase A (MAO-A):
- X-linked
- Deaminates noradrenaline, adrenaline, serotonin and dopamine
- Stop-gain point mutation causes aggressive and antisocial behaviour in males (Brunner et al, 1993)
- Common low-activity variant interacts with childhood maltreatment to increase adult antisocial behaviour (Caspi et al, 2002) [1]
Historical finding: Caspi et al. (2002) reported more antisocial outcomes after maltreatment among males with a low-activity MAOA promoter variant. This common regulatory variant is distinct from the rare stop-gain mutation described in the Brunner pedigree. Meta-analysis has found some support for interaction, but effect sizes and definitions vary [15]. It is probabilistic, not a “warrior gene,” and has no role as an individual violence test.
Why MAO-A was considered: MAO-A metabolises monoamines, making it biologically plausible as a candidate. Plausibility does not establish the developmental pathway, and neither genotype nor maltreatment should be reduced to a deterministic account of aggression.
Serotonin transporter (5HTT or SERT):
- Encoded by SLC6A4
- Promoter polymorphism (5HTTLPR): long allele having higher expression
- Short allele interacts with stressful life events (Caspi et al, 2003) and childhood adversity (Eley et al 2004) to increase depression symptoms [1]
Historical finding, not current clinical test: Caspi et al. (2003) and Eley et al. (2004) reported that the short allele modified the association between adversity and depressive symptoms. A large collaborative meta-analysis found no evidence of a strong 5-HTTLPR × stress effect [16], and a later analysis of 177,950 people found no clear support for historical major-depression candidate-gene or candidate-gene-by-environment hypotheses [17]. The slide is important as the history of psychiatric G×E research, but the variant should not be used to diagnose depression, predict response, or explain one person's illness.
Why 5HTT was considered: SLC6A4 encodes the serotonin transporter, a target of SSRIs, and the promoter repeat can influence expression. That biological plausibility did not guarantee a reproducible clinical association.
Exam Note on SERT Gene
SERT = 5-HTT, encoded by SLC6A4, and is not an Alzheimer disease risk gene. The lecture's candidate-gene interaction should be remembered as a landmark reported association whose robust replication failed—not as proof that 5-HTTLPR causes depression. APOE is the major common risk locus for late-onset Alzheimer disease; APP, PSEN1, and PSEN2 can cause rare autosomal-dominant early-onset disease.
1. Small fraction of mental disorders caused by chromosomal abnormalities or single-gene defects. 2. Majority of mental disorders have multifactorial aetiology: both predisposition (genetic/environmental) and stress (acute/chronic). 3. GWAS found > 100 loci for schizophrenia, implicating dopaminergic and glutamatergic transmission, calcium channels and synaptic proteins. 4. Rare CNVs contribute to schizophrenia by disrupting genes for synaptic proteins and other key neuronal functions. 5. Environmental factors include obstetric events, childhood adversity, chronic difficulties, stressful life events, heavy and prolonged substance misuse, and lack of social support. 6. Frequent comorbidity of different mental disorders: non-specificity (context-dependency) of many genetic and environmental effects. [1]
Current synthesis
- Aetiological factors alter probability, not destiny; the same diagnosis may arise through different pathways, and the same exposure or variant may relate to several outcomes.
- Family, twin, GWAS, sequencing, and environmental epidemiology answer different questions and carry different assumptions. Association, mechanism, prediction, and treatment response are not interchangeable.
- The clinically useful output is a collaborative predisposing–precipitating–maintaining–protective formulation, including modifiable exposures and strengths, without genetic or family blame.
- Historical examples—eugenics, early adoption cohorts, candidate genes, and stress-inoculation experiments—should be recognised for examination while clearly separated from current evidence and ethical practice.
From the Psychiatric Assessment Skills Training materials and Ryan Ho's notes [2][6]:
When you take a psychiatric history, the aetiology framework translates directly into structured history-taking:
| History Component | Aetiological Factor Elicited |
|---|---|
| Family history + genogram | Genetic predisposition; specific psychiatric disorders with high heritability (schizophrenia, bipolar, dementia) |
| Developmental history | Pre/perinatal adversity, childhood maltreatment, attachment |
| Premorbid personality | Diathesis (neuroticism, personality disorders) |
| Personal history (education, work, relationships) | Chronic difficulties, social resources |
| Substance use history | Modifiable aetiological factor |
| Recent life events | Precipitating factors |
| Current social circumstances | Maintaining/perpetuating factors, social support, expressed emotion |
High Yield Summary
- Most psychiatric disorders are multifactorial. Use the liability-threshold and diathesis–stress models as organising models, not literal deterministic mechanisms.
- Heritability is a population statistic. It varies by sample and does not predict an individual's illness, prognosis, modifiability, or best treatment.
- Genetic architecture spans rare and common variation. Schizophrenia findings include
DRD2, glutamatergic and calcium-channel regions, rare CNVs, and substantial cross-disorder genetic correlation. A locus or PRS is not a diagnosis. - 22q11.2DS is rare, variably expressed, and clinically actionable as a multisystem syndrome. About one-quarter of affected adults develop schizophrenia, but penetrance is incomplete and appearance is not diagnostic [11].
- Environmental associations are probabilistic and context-dependent. Consider pre/perinatal exposures, childhood adversity, chronic social adversity, life events, substance use, and support while avoiding parent, migrant, or family blame.
- Landmark candidate-gene interactions need historical framing.
MAOA × maltreatmenthas some meta-analytic support but is not a violence test; the proposed5-HTTLPR × stressdepression effect has not shown robust support in large collaborative analyses [15][16][17]. - Clinical translation is formulation: identify predisposing, precipitating, maintaining, and protective factors; address modifiable contributors; strengthen support; and preserve uncertainty and patient autonomy.
Active Recall - Aetiology of Psychiatric Disorders
[1] Lecture slides: CFB (PSY04) Aetiology of Psychiatric Disorders.pdf (all pages) [2] Senior notes: Ryan Ho Psychiatry.pdf (pages 155-158, 189, 196, 203) [3] Past papers: 2017 Fourth Summative SAQ.pdf (Question 10) [4] Past papers: 2025 Fourth Summative MCQ.pdf (Questions 19, 20) [5] Past papers: 2025 Fourth Summative MCQ.pdf (Question 20) [6] Lecture slides: General Clerkship-Psychiatric Assessment Skills Training-Learning Materials 2024_3 Sep.pdf (pages 2, 15) [7] Trubetskoy V, et al. Mapping genomic loci implicates genes and synaptic biology in schizophrenia. Nature. 2022. https://www.nature.com/articles/s41586-022-04434-5 [8] Adams MJ, et al. Trans-ancestry genome-wide study of depression identifies 697 associations implicating cell types and pharmacotherapies. Cell. 2025. https://pubmed.ncbi.nlm.nih.gov/39814019/ [9] International Society of Psychiatric Genetics. Genetic Testing Statement. https://ispg.net/genetic-testing-statement/ [10] Royal College of Psychiatrists. The role of genetic testing in mental health settings (CR237). 2024. https://www.rcpsych.ac.uk/docs/default-source/improving-care/better-mh-policy/college-reports/College-report-CR237---Genetic-testing-in-mental-health-settings.pdf [11] McDonald-McGinn DM, et al. 22q11.2 Deletion Syndrome. GeneReviews®. https://www.ncbi.nlm.nih.gov/books/NBK1523/ [12] World Health Organization. Child maltreatment and health-sector response guidance. https://www.who.int/news-room/fact-sheets/detail/child-maltreatment [13] NICE. Psychosis and schizophrenia in adults: Quality statement 3—Family intervention. https://www.nice.org.uk/guidance/qs80/chapter/Quality-statement-3-Family-intervention [14] Di Forti M, et al. The contribution of cannabis use to variation in the incidence of psychotic disorder across Europe (EU-GEI). Lancet Psychiatry. 2019. https://pubmed.ncbi.nlm.nih.gov/30902669/ [15] Byrd AL, Manuck SB. MAOA, childhood maltreatment, and antisocial behavior: meta-analysis of a gene-environment interaction. Biol Psychiatry. 2014. https://pubmed.ncbi.nlm.nih.gov/23786983/ [16] Culverhouse RC, et al. Collaborative meta-analysis finds no evidence of a strong interaction between stress and 5-HTTLPR genotype contributing to depression. Mol Psychiatry. 2018. https://pubmed.ncbi.nlm.nih.gov/28373689/ [17] Border R, et al. No support for historical candidate gene or candidate gene-by-interaction hypotheses for major depression across multiple large samples. Am J Psychiatry. 2019. https://pubmed.ncbi.nlm.nih.gov/30845820/
GC241 Reference (3) - Patel Dementia With Lewy Bodies
Dementia with Lewy bodies is a progressive neurodegenerative disorder characterized by cognitive decline, visual hallucinations, fluctuating attention, and parkinsonism due to abnormal alpha-synuclein protein deposits (Lewy bodies) in cortical and subcortical neurons.
CFB PSY01 An Introduction To Psychiatry
An introductory overview of psychiatry covering its scope, the biopsychosocial model of mental illness, psychiatric history-taking, mental status examination, and classification systems used in diagnosing mental disorders.