Lower GI

Anorectal Fistula

An anorectal fistula is an abnormal epithelialized tract connecting the anal canal or rectum to the perianal skin or another organ, usually resulting from a perianal abscess.

1. Definition

Let's get the terminology straight first — this trips people up.

  • Fistula = an abnormal connection between two epithelial (or epithelialised) surfaces. The word comes from Latin fistula = "pipe" or "tube." So it's a tube where there shouldn't be one.
  • Sinus = a blind-ending tract from an epithelial surface into a cavity lined by granulation tissue (i.e., one opening only). Think of it as a dead-end alley.
  • Anorectal fistula (fistula-in-ano) = an abnormal tract communicating the rectum or anal canal with the perianal skin [1]. It consists of an internal opening (usually in the anal canal near the dentate line) and an external opening (on the perianal skin), connected by a tract lined with granulation tissue [2][3].

Crucially, anorectal fistula represents the chronic phase of the perirectal suppurative process. The acute phase is the anorectal abscess. When an abscess ruptures or is surgically drained, the track may persist and epithelialise → fistula [2][3].

Key Conceptual Link

Anorectal abscess = acute phase. Anorectal fistula = chronic phase. Same disease process — cryptoglandular infection — at different time points.


2. Epidemiology

  • Incidence: ~1–2 per 10,000 population per year in Western data. In Hong Kong, anorectal fistulae are a common colorectal outpatient presentation.
  • Age: Peak incidence 30–50 years (working-age adults) [2].
  • Sex: Male predominance (M:F ≈ 2–3:1). This is thought to relate to the greater number and density of anal glands in males and possibly hormonal influences on gland activity.
  • Preceding abscess: Approximately 30–50% of patients who have an anorectal abscess will develop a subsequent fistula [3]. Conversely, > 90% of fistulae originate from a preceding cryptoglandular abscess [2].
  • IBD association: In Crohn's disease, perianal fistulae occur in ~20–30% of patients (higher in colonic and anorectal Crohn's). This is a major cause of morbidity [4].

3. Anatomy and Function

Understanding fistula anatomy requires mastering the anal canal and its spaces. Without this, classification and surgical planning make no sense.

3.1 Anal Canal

  • Surgical anal canal: From anal verge to anorectal ring (~4 cm).
  • Dentate (pectinate) line: Located ~2 cm from the anal verge. This is the watershed landmark:
    • Above: columnar epithelium, visceral nerve supply (painless), superior rectal artery, internal haemorrhoidal plexus, lymphatic drainage to internal iliac nodes.
    • Below: squamous epithelium, somatic nerve supply (painful!), inferior rectal artery, external haemorrhoidal plexus, lymphatic drainage to inguinal nodes.

3.2 Anal Glands and Crypts of Morgagni

  • At the dentate line sit 6–14 anal columns (columns of Morgagni) with intervening crypts of Morgagni (anal crypts).
  • Anal glands (4–10 in number) open into these crypts. Their ducts penetrate through the internal anal sphincter (IAS) and terminate in the intersphincteric plane (between IAS and EAS).
  • This is why the intersphincteric plane is "ground zero" for cryptoglandular infection — infection begins in the gland, spreads to the intersphincteric space, and then tracks along paths of least resistance [1][2].

3.3 Sphincter Complex

StructureTypeInnervationFunction
Internal anal sphincter (IAS)Smooth muscle (continuation of circular muscle of rectum)Autonomic (involuntary)Maintains ~70–85% of resting anal tone
External anal sphincter (EAS)Striated (skeletal) musclePudendal nerve (S2–S4) (voluntary)Voluntary squeeze, continence
PuborectalisStriated muscle (part of levator ani)Direct branches of S3–S4Maintains anorectal angle (~80°), key for continence

Why Sphincter Anatomy Matters in Fistula Surgery

Every fistula operation is a trade-off between eradicating the fistula and preserving continence. The more sphincter muscle you divide, the higher the risk of incontinence. This is why classifying fistulae by their relationship to the sphincter complex (Parks classification) is essential for surgical planning.

3.4 Perianal and Perirectal Spaces

Infection (and therefore fistula tracts) can spread through these spaces:

SpaceLocationClinical Relevance
Perianal spaceSurrounds anal verge, below skinMost common abscess site clinically; superficial fistulae
Intersphincteric spaceBetween IAS and EASOrigin of cryptoglandular infection; intersphincteric fistulae
Ischiorectal (ischioanal) spaceLateral to EAS, below levator aniLarge potential space; large abscesses can form; transsphincteric fistulae traverse this
Supralevator spaceAbove levator ani, below peritoneal reflectionSuprasphincteric and extrasphincteric fistulae; dangerous — must drain correctly
Postanal (deep) spaceBehind anal canal, between EAS and coccyx"Horseshoe" abscesses/fistulae communicate through this space

4. Etiology

4.1 Cryptoglandular Infection (> 90%) [1][2][3]

This is the dominant cause. The mechanism:

  1. Obstruction of an anal gland duct → stasis.
  2. Bacterial overgrowth within the obstructed gland (mixed flora: E. coli, Bacteroides, Enterococcus).
  3. Abscess formation in the intersphincteric space (this is the primary site because the gland terminates here).
  4. Pus tracks along the path of least resistance — this determines the type of abscess and the subsequent fistula tract.
  5. If the abscess drains (spontaneously or surgically) but the internal opening persists and the tract epithelialises → fistula.

Why does the internal opening persist? Because the infected crypt continues to seed bacteria into the tract, preventing healing. This is the rationale for identifying and treating the internal opening in fistula surgery.

4.2 Other Causes

CauseMechanism / NotesHK Relevance
Crohn's diseaseTransmural inflammation → penetrating disease → fistulae (enterocutaneous, perianal, rectovaginal). Fistulising phenotype in ~20% of CD [4].Increasing incidence of IBD in Hong Kong
TuberculosisGranulomatous infection can cause perianal abscess/fistula. Must exclude TB in any granuloma found on histology (especially in HK/endemic regions) [4].High yield for HK — TB is endemic
MalignancyRectal/anal canal carcinoma can present with or cause a fistula. Always consider in atypical/non-healing fistulae.Biopsy any suspicious tissue
Lymphogranuloma venereum (LGV)Chronic infection by Chlamydia trachomatis (L1–L3 serovars) → inflammatory perirectal mass, stricture, fistula [2].Consider in MSM population in HK
Radiation proctitisPost-pelvic radiotherapy (cervical, prostate, rectal Ca) → ischaemic tissue damage → fistula [2].
ActinomycosisActinomyces israelii — rare cause of perianal fistula/mass, typically in immunocompromised [2].
Foreign body / TraumaMucosal laceration → abscess → fistula [1][2].Includes iatrogenic (post-surgical, post-sclerotherapy)
SurgeryPost-haemorrhoidectomy, post-lateral internal sphincterotomy [1].

Exam Tip: FRIEND Mnemonic for Causes of Fistula

Foreign body, Radiation, Inflammation/Infection (Crohn's, TB, actinomycosis), Epithelialization, Neoplasm, Distal obstruction [3]. This mnemonic covers enterocutaneous fistulae broadly but is useful for anorectal fistulae too.


5. Pathophysiology

5.1 Cryptoglandular Theory (Parks' Theory) [1][2][3]

This is the cornerstone — understand it step-by-step:

Anal crypt gland obstruction

Intersphincteric gland infection

Intersphincteric abscess (primary)

Pus tracks along path of least resistance

Secondary abscess formation
(perianal / ischiorectal / supralevator)

Spontaneous rupture or surgical drainage

Persistent internal opening + granulation-lined tract

FISTULA-IN-ANO

Why does it become chronic?

  • The internal opening (at the infected crypt) continuously seeds bacteria.
  • The tract becomes lined with granulation tissue and eventually partly epithelialised, preventing spontaneous closure.
  • The ongoing faecal contamination from the anal canal keeps the inflammatory cycle going.

5.2 Crohn's Disease Pathophysiology

  • Transmural inflammation is the hallmark of Crohn's — inflammation penetrates the full thickness of the bowel wall.
  • This leads to microperforations and abscess formation, which then track to form fistulae.
  • Crohn's fistulae are often complex (multiple tracts, horseshoe configurations, rectovaginal).
  • Fistulising disease accounts for ~20% of Crohn's disease [3][4].

5.3 Why Some Abscesses Form Fistulae and Others Don't

  • If the abscess is adequately drained AND the internal opening heals → no fistula.
  • Pus culture showing gut flora (e.g., E. coli, Bacteroides) suggests communication with the anal canal lumen → higher likelihood of fistula formation [3].
  • Pus culture showing skin flora (e.g., Staphylococcus) → less likely to form a fistula (infection was superficial) [3].

Clinical Pearl: Pus Culture Predicts Fistula

After I&D of an anorectal abscess, always send pus for culture and sensitivity. Gut flora = likely fistula (will need follow-up). Skin flora = reassurance (unlikely to develop fistula) [3].


6. Classification

6.1 Parks Classification [1][2][3]

This is THE classification. It describes the fistula tract's relationship to the external anal sphincter (EAS).

Parks TypeNameFrequencyCourseDescription
Type IIntersphincteric45%Between IAS and EASOriginates from dentate line, travels along intersphincteric plane, opens at anal verge/perianal skin [1][2]
Type IITranssphincteric30%Through EASTracks through the EAS into the ischiorectal fossa, then to perianal skin [1][2]
Type IIISuprasphincteric20%Over the top of EASTracks upward in intersphincteric plane, passes over puborectalis/top of EAS, descends through ischiorectal fossa to skin
Type IVExtrasphincteric5%Outside the sphincter complex entirelyPrimary opening in the rectum (above the sphincters), tracks through levator ani to perineal skin. Does NOT traverse the sphincter from inside out — the origin is rectal, not cryptoglandular [1][2]

Not included in Parks: Superficial fistula — does not involve the sphincter at all (subcutaneous/submucosal tract). Easy to treat [3].

6.2 Simple vs Complex Classification [2][3]

This classification determines surgical strategy — simple fistulae can usually be laid open safely; complex ones cannot.

Simple fistula:

  • Superficial fistula
  • Intersphincteric (Type I)
  • Low transsphincteric (Type II) involving < 30% of EAS [2][3]

Complex fistula:

  • High transsphincteric (Type II) involving ≥ 30% of EAS [2][3]
  • Suprasphincteric (Type III)
  • Extrasphincteric (Type IV)
  • Horseshoe fistulas
  • Multiple tracts
  • Recurrent fistula
  • Fistula associated with Crohn's disease [2][3]
  • Fistula related to TB, HIV, radiation [2]
  • Women with anterior fistulas / rectovaginal fistulas (thinner anterior sphincter in females → higher incontinence risk) [3]
  • Patients with pre-existing anal incontinence [2]

Why Is Anterior Fistula in Women 'Complex'?

Women have a shorter, thinner anterior sphincter compared to men (the perineal body is shorter). Dividing even a small portion of anterior EAS in a woman risks incontinence. That is why an anterior transsphincteric fistula in a woman is classified as complex, even if it involves < 30% of the sphincter.

6.3 High vs Low Classification

  • Low fistula: Below the dentate line / involving minimal sphincter → can usually fistulotomy safely.
  • High fistula: Above the sphincter complex or involving significant sphincter → need sphincter-sparing techniques.

7. Clinical Features

7.1 Symptoms

SymptomPathophysiological Basis
Intermittent perianal discharge (purulent, serosanguinous, malodorous)The fistula tract secretes inflammatory exudate and collects faecal material; intermittent because the external opening may periodically seal over then re-open when pressure builds [2][3]
Perianal pain (intermittent, worse with sitting, activity, defecation)Inflammation and distension of the tract, especially when the external opening blocks and pus re-accumulates (forming a small abscess). Pain characteristically improves when discharge occurs (decompression of the abscess) [2]
Painful defecationStool passage stretches the inflamed anal canal and compresses the fistula tract [2]
Perianal pruritus (itching)Chronic irritation of perianal skin by persistent discharge → contact dermatitis and maceration [2]
Passage of flatus/faeces through external openingSuggests the internal opening communicates with the rectal lumen (higher fistula) rather than just the anal canal [3]
Recurrent perianal abscessClassic history — patient keeps getting abscesses at the same site because the underlying fistula (with its persistent internal opening) is never addressed [3]
Systemic symptoms (fever, malaise) — if acute abscessAcute sepsis from undrained pus collection

Classic History

"Doctor, I had an abscess drained 3 months ago, but it never completely healed. I keep getting discharge and occasional swelling in the same spot." → Think fistula-in-ano. Suspect anal fistula if an anorectal abscess persists after 6–12 weeks [3].

7.2 Signs

SignPathophysiological Basis
External opening on perianal skinVisible as a small raised area of granulation tissue (red, slightly elevated papule) that may discharge pus or blood on gentle manual compression [2][3]
Palpable cord-like, indurated tractThe granulation-tissue-lined fistula tract is palpable as a firm subcutaneous cord running from the external opening towards the anal canal [3]
Perianal skin excoriation and erythemaChronic maceration from persistent discharge [2]
Internal opening (on DRE/proctoscopy)May feel as a small pit or area of induration at the dentate line. May exude pus on pressure. NOT always palpable [2]
Multiple external openings (in complex fistulae)Suggests complex/branching fistula — think Crohn's disease, horseshoe fistula, or TB
Perianal scarringSuggests recurrent disease or previous surgery

7.3 Goodsall's Rule [3]

This is a clinical "rule of thumb" to predict the location of the internal opening based on the position of the external opening.

  • Draw an imaginary transverse line across the anus (through the ischial spines/tuberosities).
  • External opening ANTERIOR to the transverse line → fistula tracks in a straight (radial) line to the nearest crypt at the dentate line.
  • External opening POSTERIOR to the transverse line → fistula follows a curved track to open at the posterior midline of the anal canal.

Goodsall's rule has higher reliability when the external opening is within 3 cm of the anal verge [3]. Beyond 3 cm, the rule is less reliable (the tract is more likely to be complex).

Why does this pattern occur? The posterior midline is where the anal glands are most concentrated. Additionally, the posterior anal canal has a relatively avascular area (the "posterior commissure"), which provides a path of least resistance for infection to track through.

Goodsall's Rule — Exam Favourite

Anterior = straight. Posterior = curved to midline. Simple mnemonic: "Anterior = strAight."

7.4 Associated Features to Assess

When evaluating a patient with a fistula, always look for features suggesting an underlying cause:

  • Crohn's disease: multiple fistulae, skin tags ("elephant ear" tags), fissures away from the midline, oral ulcers, abdominal pain, diarrhoea, weight loss, perianal disease preceding intestinal disease.
  • TB: chronic non-healing fistula, constitutional symptoms (night sweats, weight loss), granulomata on histology (caseating).
  • Malignancy: hard, irregular edges of fistula, bloody discharge, weight loss, change in bowel habit.
  • HIV/immunosuppression: unusual organisms, poor healing.

8. Pathophysiology–Clinical Feature Connections (Summary Table)

PathophysiologyClinical Feature
Cryptoglandular infection → intersphincteric abscess → chronic tractPersistent perianal discharge
External opening intermittently seals → pus re-accumulatesCyclical pain relieved by discharge
Faecal contamination of tract via internal openingMalodorous discharge, failure to heal
Chronic inflammation and maceration of perianal skinPruritus, excoriation, erythema
Granulation tissue at external openingVisible papule/dimple that bleeds or discharges on compression
High fistula with internal opening at rectal levelPassage of flatus/faeces through external opening
Transmural Crohn's inflammationMultiple complex fistulae, associated GI symptoms

High Yield Summary

  1. Anorectal fistula = chronic phase of anorectal abscess; abnormal tract connecting anal canal/rectum to perianal skin.
  2. > 90% caused by cryptoglandular infection — infection of anal glands at the dentate line → intersphincteric abscess → fistula.
  3. Other causes: Crohn's disease (~20% fistulising), TB (important in HK), malignancy, radiation, LGV, actinomycosis, foreign body.
  4. Parks classification (by relation to EAS): Type I Intersphincteric (45%), Type II Transsphincteric (30%), Type III Suprasphincteric (20%), Type IV Extrasphincteric (5%).
  5. Simple vs Complex determines surgical approach: Simple = superficial, Type I, low Type II ( < 30% EAS). Complex = high Type II (≥ 30% EAS), Type III, Type IV, Crohn's, recurrent, multiple tracts, anterior in women.
  6. Goodsall's rule: Anterior external opening → straight tract to nearest crypt. Posterior → curved to posterior midline. Reliable if external opening < 3 cm from anal verge.
  7. Classic presentation: Intermittent perianal discharge + cyclical pain (worse when blocked, better when drains) + history of previous abscess.
  8. Pus culture after abscess I&D: Gut flora = likely fistula; Skin flora = reassurance.
  9. Always consider underlying Crohn's disease, TB, or malignancy in atypical or non-healing fistulae — especially in Hong Kong.

Active Recall - Anorectal Fistula: Definition to Clinical Features

1. What is the cryptoglandular theory of anorectal fistula formation? Describe the step-by-step pathophysiology.

Show mark scheme

Obstruction of anal gland duct at crypt of Morgagni → gland infection → intersphincteric abscess (glands terminate in intersphincteric plane) → pus tracks along path of least resistance → abscess drains but internal opening persists → epithelialised tract forms = fistula. Ongoing faecal contamination from internal opening prevents healing.

2. Name the four types in Parks classification of anal fistulae with their frequencies and briefly describe each tract course.

Show mark scheme

Type I Intersphincteric (45%): between IAS and EAS, opens at anal verge. Type II Transsphincteric (30%): through EAS into ischiorectal fossa. Type III Suprasphincteric (20%): up intersphincteric plane, over puborectalis/EAS, down through ischiorectal fossa. Type IV Extrasphincteric (5%): primary opening in rectum, through levator ani, bypasses sphincters entirely.

3. What distinguishes a simple from a complex anal fistula? Give at least 4 features of complex fistula.

Show mark scheme

Simple: superficial, intersphincteric, low transsphincteric involving less than 30% EAS. Complex: high transsphincteric (30% or more EAS), suprasphincteric, extrasphincteric, multiple tracts, Crohn's-associated, radiation-related, recurrent, anterior fistula in women, horseshoe, pre-existing incontinence.

4. State Goodsall's rule and its reliability limitation.

Show mark scheme

External opening anterior to transverse anal line → straight radial tract to nearest crypt. External opening posterior to line → curved tract opening at posterior midline. More reliable when external opening is within 3 cm of anal verge.

5. After incision and drainage of an anorectal abscess, how does pus culture help predict fistula formation?

Show mark scheme

Gut flora (E. coli, Bacteroides) on culture suggests communication with anal canal lumen → high likelihood of fistula → needs follow-up. Skin flora (Staphylococcus) suggests superficial infection → unlikely fistula → reassurance.

6. A patient presents with multiple perianal fistulae, skin tags, and chronic diarrhoea. What underlying condition must you consider and why?

Show mark scheme

Crohn's disease. Transmural inflammation causes penetrating disease leading to fistulae. Crohn's fistulae are often complex with multiple tracts. Perianal disease occurs in 20-30% of Crohn's. Colonoscopy should be performed to confirm diagnosis.


References

[1] Lecture slides: GC 179. Anal pain perianal lesions and sepsis.pdf (p49, p54) [2] Senior notes: felixlai.md (Anorectal fistulas section, Anorectal abscess section) [3] Senior notes: maxim.md (Anal fistula, Anorectal abscess sections) [4] Lecture slides: Inflammatory bowel disease.pdf; Senior notes: felixlai.md (IBD section), maxim.md (Surgical procedures for CD)

Differential Diagnosis of Anorectal Fistula

The differential diagnosis of anorectal fistula essentially boils down to one question: what else can cause a perianal opening with discharge, pain, or swelling? Let's work through this systematically from first principles.

A patient presenting with perianal discharge, pain, and/or a visible external opening on the perianal skin could have several conditions. The key is to distinguish a true fistula (communication between two epithelial surfaces) from conditions that mimic it. Diagnosis can usually be made by careful history and examination [1], but you must actively consider — and exclude — the differential diagnoses below.


Approach to Differential Diagnosis

The differentials can be organised by the dominant presenting feature:


Detailed Differential Diagnoses

1. Anorectal Abscess

FeatureDetails
Relationship to fistulaAbscess = acute phase; fistula = chronic phase of the same cryptoglandular process [2][3].
Why it's in the DDxAn undrained or incompletely drained abscess can mimic a fistula (and vice versa). A fistula with a blocked external opening re-accumulates pus and presents as a "recurrent abscess."
Key distinguishing featuresConstant perianal pain, exacerbated when sitting down [4]. Erythematous, fluctuant, tender mass on palpation/DRE [4]. Systemic features (fever, malaise) more prominent than in chronic fistula. No visible external opening (unless spontaneously draining).
How to differentiateFistula has an established external opening with chronic intermittent discharge. Abscess is an acute collection without a mature tract. However, they coexist — suspect anal fistula if an anorectal abscess persists after 6–12 weeks [3].

Abscess vs Fistula — Same Coin, Two Sides

Do not think of these as completely separate diagnoses. An abscess that doesn't resolve likely has an underlying fistula. After I&D, always arrange follow-up to assess for fistula. Remember: pus culture with gut flora = likely fistula; skin flora = reassurance [4].


2. Anal Fissure

FeatureDetails
What is it?A tear in the anoderm distal to the dentate line [5][6].
Why it's in the DDxBoth present with painful defecation and may have perianal discharge/bleeding [2][5].
Key distinguishing featuresPain on defecation — classically described as a tearing pain during bowel movement with a brief respite then prolonged burning pain afterwards (due to IAS spasm) [5][6]. Fresh rectal bleeding — typically small amount on toilet paper or surface of stool [5]. Diagnosis is by spreading the buttock to reveal the fissure [1]. Most at posterior midline (6 o'clock) due to least perfusion [6]. Chronic fissure has sentinel pile + hypertrophied anal papillae [6].
How to differentiateFissure = visible linear tear on inspection. Fistula = external opening (dimple/granulation tissue) with a palpable cord-like tract [3]. Fissure pain is during and immediately after defecation (linked to stretching the tear). Fistula pain is cyclical — builds when external opening blocks, improves when pus discharges. Rectal examination and proctoscopy are painful and not indicated in acute fissure [1].

Atypical Fissure = Think Crohn's

Always suspect perianal Crohn's disease if the fissure is: non-midline, recurring, multiple, unusually deep or wide, or associated with perianal hypertrophic skin tags [6]. In Crohn's, fissures and fistulae often coexist.


3. Pilonidal Sinus

FeatureDetails
What is it?Formation of a sinus in the natal cleft (intergluteal cleft) due to infection and obstruction of a hair follicle → foreign body reaction → cavity formation [7].
Why it's in the DDxBoth present as a perianal discharging opening with intermittent pain and swelling [7].
Key distinguishing featuresLocated in the sacrococcygeal region (natal cleft), NOT at the anal verge. Does not continue into the anal canal (cf. anal fistula) [7]. Often has embedded hairs visible at the sinus opening. Risk factors: Caucasian males with coarse dark body hair, prolonged sitting, increased sweating [7]. Rare in Hong Kong [7].
How to differentiateLocation is key: pilonidal sinus is in the midline natal cleft (between the buttocks, over the sacrococcygeal area), well away from the anus. Anal fistula has its external opening close to the anus (usually within 3–5 cm of the anal verge) and communicates with the anal canal on probing/imaging.

4. Perianal Crohn's Disease

FeatureDetails
What is it?Perianal manifestation of Crohn's disease — affects 24.5% of patients with Crohn's disease [8]. Includes skin tags, fissures, abscesses, fistulae, and strictures.
Why it's in the DDxCrohn's perianal fistulae are a specific subset. But sometimes perianal disease is the first presentation of Crohn's, before any intestinal symptoms are apparent — so you must think of it.
Key distinguishing featuresMore complicated courses of fistula tract [8]. Multiple external openings, complex/branching tracts, associated "elephant ear" skin tags, off-midline fissures, rectal stricture. Bowel symptoms (diarrhoea, abdominal pain, weight loss) may or may not be present. MRI and EAUS necessary to document before definitive treatment [8].
How to differentiateColonoscopy if Crohn's is suspected [3]. Look for skip lesions, cobblestoning, non-caseating granulomata on biopsy. Anti-TNF +/- AZA and/or seton drainage is the treatment approach [8] — very different from simple cryptoglandular fistula management.

Perianal Crohn's — Don't Miss It

Any patient with a complex, recurrent, or atypical fistula (multiple tracts, off-midline, associated with non-healing wounds) should be investigated for Crohn's disease with colonoscopy, even in the absence of GI symptoms. 83% of perianal Crohn's patients required surgery [8].


5. Anal Carcinoma

FeatureDetails
What is it?Malignancy of the anal canal — 80% squamous cell carcinoma (below dentate line), 10% adenocarcinoma (above dentate line), others include melanoma [7].
Why it's in the DDxCan present with painful PR bleeding, perianal mass, and discharge — mimicking a fistula. A malignant fistula may also develop. Colorectal neoplasm needs to be excluded [1].
Key distinguishing featuresHard, irregular, non-tender mass on DRE (vs. the soft granulation tissue of a fistula opening). Risk factors: HPV infection (esp. 16/18), HIV, smoking, immunosuppression [7]. May have inguinal lymphadenopathy (tumour below dentate line drains to superficial inguinal nodes) [7].
How to differentiateBiopsy any suspicious, indurated, or non-healing perianal lesion under EUA. MRI pelvis for staging. Always send tissue from the fistula tract for histology at the time of surgery — to exclude malignancy.

6. Hidradenitis Suppurativa

FeatureDetails
What is it?Chronic inflammatory condition of the apocrine sweat glands (found in axillae, groin, perineum, perianal area). Leads to recurrent abscesses, sinus tracts, and scarring.
Why it's in the DDxProduces multiple discharging sinuses in the perianal/perineal area that can be confused with complex fistulae.
Key distinguishing featuresTypically bilateral, involving the perineum and groin (not centred on the anal canal). Extensive scarring and bridged skin between sinuses. Often also affects axillae and inguinal folds. No internal opening in the anal canal on anoscopy/proctoscopy.
How to differentiateDistribution pattern (bilateral, groin/axilla involvement). On examination/imaging, there is no communication with the anal canal lumen.

7. Presacral Epidermoid / Dermoid Cyst

FeatureDetails
What is it?Developmental cyst in the presacral/retrorectal space. Can become infected and present as a perianal/gluteal abscess or draining sinus [2].
Why it's in the DDxWhen infected, it can mimic an anorectal abscess or fistula with posterior perianal swelling and discharge.
Key distinguishing featuresMass is typically posterior, palpable on DRE as a smooth, well-defined retrorectal mass. No internal opening at the dentate line. MRI shows a well-circumscribed presacral cystic lesion.
How to differentiateMRI pelvis differentiates from fistula. No communication with anal canal lumen.

8. Anal Ulcers or Sores [2]

FeatureDetails
What are they?Ulceration of the anal canal/perianal skin from various causes: STIs (syphilitic chancre, HSV, chancroid), TB, HIV, solitary rectal ulcer syndrome.
Why they're in the DDxCan present with perianal pain, discharge, and visible lesion — similar to the external opening of a fistula.
Key distinguishing featuresNo palpable tract or cord connecting to an internal opening. Syphilitic chancre: painless ulcer with raised edges. HSV: multiple shallow painful vesicles/ulcers. Solitary rectal ulcer: anterior rectal wall, associated with straining/rectal prolapse.
How to differentiateCareful inspection (no tract), STI screening (serology, swabs), biopsy if needed.

9. Rectal Prolapse [9]

FeatureDetails
What is it?Protrusion of rectal wall through the anus — full thickness (procidentia) or mucosal only.
Why it's in the DDxCan present with mucus discharge, pain, and perianal wetness — similar to fistula symptoms [9].
Key distinguishing featuresVisible circumferential concentric mucosal folds protruding through the anus (vs. radial folds in prolapsed haemorrhoids). History of mass protruding on straining that reduces spontaneously or manually. Predominantly elderly women [9].
How to differentiateAsk the patient to strain — prolapse becomes visible. No external opening or tract.

10. Proctalgia Fugax [7]

FeatureDetails
What is it?Benign, brief attacks of rectal pain at night, unrelated to defecation — occurs in young anxious men [7].
Why it's in the DDxEpisodic perianal/rectal pain could be confused with the cyclical pain of a fistula.
Key distinguishing featuresNo discharge, no external opening, no physical findings. Pain is brief (seconds to minutes), often nocturnal, resolves spontaneously. Diagnosis of exclusion.
How to differentiateEntirely clinical — normal examination. No tract, no opening, no discharge.

Summary Differential Diagnosis Table

ConditionKey Distinguishing Feature from Fistula
Anorectal abscessAcute fluctuant tender mass, no mature external opening/tract
Anal fissureVisible linear tear at anal verge, tearing pain on defecation, no tract
Pilonidal sinusNatal cleft location (sacrococcygeal), does not communicate with anal canal
Perianal Crohn's diseaseMultiple complex tracts, skin tags, associated GI symptoms, non-caseating granulomata
Anal carcinomaHard irregular mass, inguinal LN, non-healing, HPV risk factors
Hidradenitis suppurativaBilateral perineal/groin sinuses, axillary involvement, no anal canal communication
Presacral cystPosterior retrorectal smooth mass on DRE, no internal anal opening
Anal ulcers/soresNo tract or cord, consider STI and TB, biopsy
Rectal prolapseCircumferential mucosal protrusion on straining, no external opening
Proctalgia fugaxNormal examination, brief nocturnal pain, diagnosis of exclusion

Clinical Decision-Making Flow

When you see a patient with a perianal external opening and discharge, your systematic approach should be:

  1. Is it a fistula or something else? — Examine for a tract, look for internal opening, check location relative to anal canal.
  2. If it's a fistula, is it simple or complex? — Parks classification, assess sphincter involvement.
  3. Is there an underlying cause? — Always consider Crohn's disease (colonoscopy), TB (especially in HK), and malignancy (biopsy).
  4. Common anorectal conditions are mostly benign but colorectal neoplasm needs to be excluded [1].

High Yield Summary

  1. The three core differentials listed in senior notes are: anorectal abscess, anal fissure, and anal ulcers/sores [2].
  2. Anorectal abscess = acute phase of the same cryptoglandular process; suspect fistula if abscess persists > 6–12 weeks.
  3. Anal fissure = linear tear below dentate line; tearing pain on defecation; posterior midline; no tract.
  4. Pilonidal sinus is in the natal cleft and does NOT communicate with the anal canal — this is the key differentiator.
  5. Always exclude Crohn's disease in complex/recurrent/atypical fistulae — perianal CD affects ~24.5% of Crohn's patients.
  6. Always exclude malignancy — biopsy any suspicious, indurated, non-healing perianal lesion; colorectal neoplasm needs to be excluded.
  7. Hidradenitis suppurativa mimics complex fistulae but has bilateral distribution, groin/axillary involvement, and no anal canal communication.
  8. Proctalgia fugax = normal examination, brief nocturnal pain in young anxious men — diagnosis of exclusion.

Active Recall - Anorectal Fistula: Differential Diagnosis

1. Name the three differential diagnoses for anorectal fistula listed in the senior notes.

Show mark scheme

Anal abscess, anal fissure, anal ulcers or sores. Abscess is the acute phase of the same process. Fissure is a linear tear below the dentate line. Anal ulcers include STI-related and solitary rectal ulcer syndrome.

2. How do you distinguish a pilonidal sinus from an anorectal fistula on clinical examination?

Show mark scheme

Location: pilonidal sinus is in the natal cleft (sacrococcygeal region), NOT at the anal verge. It does not communicate with the anal canal. Embedded hairs may be visible. Anal fistula external opening is close to the anus and communicates with the anal canal.

3. A 28-year-old man presents with multiple perianal fistulae, skin tags, and chronic diarrhoea. What is the most important differential to exclude and how would you investigate?

Show mark scheme

Crohn's disease (perianal CD affects 24.5% of Crohn's patients). Investigate with colonoscopy looking for skip lesions and non-caseating granulomata on biopsy. MRI pelvis and endoanal ultrasound to map fistula anatomy before definitive treatment.

4. Why must you biopsy an atypical or non-healing perianal fistula? What malignancy are you excluding and what are its risk factors?

Show mark scheme

Must exclude anal carcinoma (80% SCC, below dentate line). Risk factors: HPV infection (esp. 16 and 18), HIV, smoking, immunosuppression, Crohn's disease. Colorectal neoplasm needs to be excluded in any atypical perianal presentation.

5. What clinical feature distinguishes hidradenitis suppurativa from complex anorectal fistulae?

Show mark scheme

Hidradenitis affects apocrine gland-bearing skin, typically bilateral, involving perineum, groin, and axillae. No internal opening in the anal canal. Extensive scarring and bridged skin between sinuses. No communication with the anal canal lumen on imaging.


References

[1] Lecture slides: GC 179. Anal pain perianal lesions and sepsis.pdf (p46, p56, p57, p77) [2] Senior notes: felixlai.md (Anorectal fistulas — Clinical manifestation, Differential diagnosis) [3] Senior notes: maxim.md (Anal fistula — Assessment section) [4] Senior notes: maxim.md (Anorectal abscess — Clinical diagnosis, Management) [5] Senior notes: felixlai.md (Anal fissures — Clinical manifestation) [6] Senior notes: maxim.md (Anal fissure section) [7] Senior notes: maxim.md (Pilonidal sinus, Proctalgia fugax, Anal carcinoma sections) [8] Lecture slides: Inflammatory bowel disease.pdf (p45, p48) [9] Senior notes: felixlai.md (Rectal prolapse section)

Diagnosis of Anorectal Fistula

Diagnostic Principles

Before diving into individual investigations, understand the three goals of diagnosing a fistula — every investigation you order serves one of these purposes [1]:

  1. Define the anatomy of the pathological process — where is the internal opening, external opening, primary tract, and any secondary extensions? What is the relationship to the sphincter complex? (This determines Parks classification → determines surgery.)
  2. Help in the diagnosis and assess the severity of disease — is this simple or complex? Is there active sepsis?
  3. Exclude diseases in the proximal bowel and associated bowel problems (e.g., inflammatory bowel disease) — is there an underlying cause like Crohn's, TB, or malignancy? [1]

No Formal 'Diagnostic Criteria'

Unlike many medical conditions, anorectal fistula does not have formal diagnostic criteria akin to the Jones criteria or McDonald criteria. The diagnosis is clinical — based on history, examination, and confirmed by imaging/EUA. The "criteria" are essentially: (1) compatible history, (2) identifiable external opening, (3) demonstrable internal opening and tract connecting the two. The real diagnostic challenge is classifying the fistula accurately to plan surgery.


Diagnostic Algorithm


Investigation Modalities

1. Clinical Examination (The Foundation)

Anorectal fistula is primarily a clinical diagnosis [1]. Clinical examination is the first and most important step [1].

a. History

Approach to anorectal diseases requires a focused history [1]:

  • Present illness: anorectal symptoms — pain, bleeding, mass, prolapse [1]. For fistula specifically: intermittent perianal discharge, cyclical pain (worse when blocked, better when drains), recurrent abscess at the same site.
  • Past health: medical diseases, previous surgery [1] — prior anorectal abscess drainage? Previous fistula surgery? IBD? TB? Radiation?
  • Family history [1] — IBD.
  • Sexual history [1] — LGV, HIV, HPV (anal carcinoma).
b. External Inspection
  • External opening visible on perianal skin [1][2]:
    • Typically a small dimpled area of granulation tissue that drains pus or blood on manual compression [2].
    • Pustule-like lesion in perianal or buttock area [2].
    • Perianal skin is excoriated and inflamed from chronic discharge [2].
  • Count the number of external openings — multiple openings suggest complex fistula or Crohn's disease.
  • Note the position of the external opening relative to the anus → apply Goodsall's rule [3]:
    • Anterior to transverse anal line → straight radial tract.
    • Posterior to transverse anal line → curved tract to posterior midline.
    • Higher reliability if external opening within 3 cm of anal verge [3].

Do NOT Probe in Clinic!

On initial outpatient examination, do NOT probe the fistula [3]. Blind probing in the clinic without anaesthesia risks creating a false passage and causing pain. Probing is done under anaesthesia during EUA [2][3].

c. Digital Rectal Examination (DRE)
  • PR: induration with cord-like structure [1] — the fistula tract is palpable as a firm, cord-like subcutaneous structure running from the external opening towards the anal canal.
  • May feel a pit or area of induration at the dentate line corresponding to the internal opening.
  • Assess sphincter tone (resting and squeeze) — baseline continence assessment before surgery is critical.
  • Feel for any abscess (fluctuance, tenderness) or mass (hard, irregular = malignancy).
d. Proctoscopy / Sigmoidoscopy
  • Internal opening in the anus can be viewed with anoscopy [2].
  • Internal opening in the rectum can be viewed with sigmoidoscopy [2].
  • May see pus exuding from the internal opening.
  • Also assesses for concurrent pathology (haemorrhoids, fissure, rectal mucosal changes suggesting Crohn's or malignancy).

2. Imaging Studies

Imaging studies are usually not necessary for straightforward simple fistulae [1]. However, they are essential in specific scenarios.

a. MRI Pelvis (Gold Standard Imaging)

MRI is the accurate technique for evaluation of the primary track of fistula and any extensions [1].

When to order MRI [1]:

  • Complicated high fistula
  • Recurrent fistula
  • When anatomy is not obvious

MRI and EAUS are necessary to document before definitive treatment in perianal Crohn's disease [8].

MRI SequenceWhat It ShowsWhy It Matters
T2-weighted (with fat suppression)Fluid-filled tracts appear bright/hyperintense against dark fatDemonstrates active tracts and secondary extensions filled with fluid/pus
T1-weighted post-gadoliniumEnhancing granulation tissue lining the tract wallDifferentiates active inflammation (enhancing) from fibrotic/healed tracts (non-enhancing)
STIR sequencesSuppresses fat signal, highlights oedema and fluidExcellent for detecting abscesses (bright collections) and inflamed tracts

Key MRI findings and interpretation:

  • Primary fistula tract: linear hyperintense tract on T2W connecting internal and external openings. Classify its relationship to EAS → Parks type.
  • Secondary extensions/branches: additional tracts branching from the primary tract (e.g., horseshoe extension in the ischiorectal fossa or supralevator space).
  • Abscess: well-defined fluid collection with enhancing rim post-gadolinium. Must be drained before definitive fistula surgery.
  • Internal opening: identified as a defect in the IAS at the level of the dentate line, often with surrounding inflammation.
  • Sphincter integrity: assess IAS and EAS for defects (from prior surgery or obstetric injury) — affects surgical planning.

St James's University Hospital MRI Classification (widely used):

GradeDescription
1Simple linear intersphincteric fistula
2Intersphincteric fistula with intersphincteric abscess or secondary tract
3Transsphincteric fistula
4Transsphincteric fistula with abscess or secondary tract in ischiorectal fossa
5Supralevator or translevator disease

Higher grade = more complex = higher recurrence risk, needs sphincter-sparing surgery.

MRI is King for Complex Fistulae

If you remember one investigation for complex fistula, it's MRI pelvis. It has ~90% accuracy for classifying fistula anatomy and detecting secondary extensions that might be missed on clinical examination alone. It has largely replaced fistulography in modern practice.

b. Endoanal Ultrasound (EAUS / Transrectal Ultrasound)

Transrectal ultrasound can be used to assess complex fistula [1] and assess the sphincter muscles in patients with faecal incontinence [1].

  • Technique: High-frequency (7–16 MHz) rotating endoprobe inserted into the anal canal.
  • Instilling H₂O₂ (hydrogen peroxide) via the external opening improves visualisation of the fistula tract — the microbubbles appear hyperechoic (bright) on ultrasound [3].
FindingInterpretation
Hypoechoic tract between IAS and EASIntersphincteric fistula
Hypoechoic tract crossing EASTranssphincteric fistula
Hypoechoic collectionAbscess
Sphincter defectPrior sphincter injury — affects surgical planning
Hyperechoic tract after H₂O₂Tract enhancement confirming fistula course

Advantages: No radiation, real-time imaging, good sphincter assessment, bedside availability. Limitations: Operator-dependent, limited field of view (cannot see supralevator disease as well as MRI), uncomfortable without anaesthesia.

MRI vs EAUS: Both have similar accuracy for classifying primary tracts (~85–90%). MRI is superior for detecting secondary extensions and supralevator disease. In practice, MRI is preferred for complex fistulae; EAUS is a good alternative if MRI is unavailable or for sphincter assessment.

c. Fistulography [1][2]

Fistulogram [1] — injection of water-soluble contrast through the external opening followed by radiographs.

  • Largely superseded by MRI and EAUS in modern practice.
  • Can demonstrate the tract, but has poor sensitivity for secondary extensions and does not show the relationship to sphincter muscles well.
  • May have a role when MRI/EAUS are unavailable.
d. CT Scan
  • Less useful than MRI for fistula tract delineation (poorer soft-tissue contrast).
  • Main role: CT/MRI scan indicated in a non-palpable abscess [5] — particularly useful for detecting deep abscesses (supralevator, ischiorectal) that are not clinically apparent.
  • CT abdomen/pelvis may also be used to assess for Crohn's disease complications (strictures, other fistulae).

3. Examination Under Anaesthesia (EUA) — The Definitive Assessment

Examination under anesthesia (EUA) is required before surgery to trace the fistula tract [3]. This is the most important investigation because it combines diagnostic confirmation with therapeutic planning — and is often performed immediately before definitive surgery.

What happens during EUA:

  1. Visual inspection of perianal area (external opening, scarring, Crohn's features).
  2. DRE with relaxed sphincter — assess internal opening, induration, sphincter integrity.
  3. Proctoscopy — identify internal opening (may see pus draining from a crypt at the dentate line).
  4. Fistula probing [2]:
    • A fistula probe (malleable metal probe) is gently inserted into the external opening and passed along the tract towards the internal opening.
    • Determine whether the fistula is simple or complex based on the extent of anal sphincter muscle involvement [2].
    • Performed with caution to avoid creating a false passage by penetrating the fistula wall [2].
  5. Injection of hydrogen peroxide or methylene blue through external opening — helps visualise the internal opening (dye emerges at the crypt).
  6. Assessment of sphincter bulk around the tract — the surgeon palpates how much muscle lies between the probe and the skin to decide if fistulotomy is safe.

The Surgeon's Dilemma at EUA

At EUA, the surgeon must answer: "Can I safely lay this open (fistulotomy) without causing incontinence?" If the probe shows the tract passes through > 30% of the EAS, or if the patient has poor baseline tone, or if this is a complex/recurrent fistula — the answer is no, and a sphincter-sparing approach (seton, advancement flap, LIFT) is needed instead.


4. Investigations to Exclude Underlying Causes

These are not for diagnosing the fistula per se but for answering "Why does this patient have a fistula?" — essential in atypical cases.

a. Colonoscopy [3][8]
  • Indication: Colonoscopy if suspect Crohn's disease [3].
  • Any patient with complex, recurrent, multiple, or atypical fistulae should have a colonoscopy.
  • Look for: skip lesions, cobblestoning, aphthous ulcers, non-caseating granulomata on biopsy.
  • 24.5% of patients with Crohn's disease have perianal involvement [8]; sometimes perianal disease is the first manifestation.
b. Histology / Biopsy
  • Tissue from the fistula tract (curettings from EUA) should be sent for histology.
  • Granulomata: if found, must differentiate Crohn's (non-caseating) from TB (caseating). Must exclude TB — especially in Hong Kong [2].
  • Dysplasia/malignancy: biopsy any hard, irregular, or suspicious tissue.
  • Actinomycosis: "sulphur granules" on histology.
c. TB Workup
  • CXR, sputum AFB (if pulmonary involvement suspected).
  • Tissue AFB staining and TB culture from fistula curettings.
  • Interferon-gamma release assay (IGRA) / Mantoux test.
  • Important in Hong Kong (TB is endemic).
d. Blood Tests (Supportive)
TestRationale
FBCRaised WCC suggests active sepsis; anaemia in Crohn's
CRP / ESRInflammatory markers — elevated in active sepsis, Crohn's
AlbuminLow in chronic Crohn's (malnutrition)
LFTBaseline; PSC screen in Crohn's/UC
e. Pus Culture and Sensitivity [4]
  • After abscess drainage: pus for C/ST (culture and sensitivity testing).
  • Gut flora (E. coli, Bacteroides) → communication with anal canal lumen → likely fistula → arrange follow-up [4].
  • Skin flora (Staphylococcus) → superficial infection → unlikely fistula → reassurance [4].

Summary: Which Investigation and When?

ScenarioInvestigations
Straightforward simple fistulaClinical exam + EUA (often combined with surgery). Imaging usually not necessary [1].
Complicated high fistulaMRI pelvis (pre-operative) + EUA [1]
Recurrent fistulaMRI pelvis + EUA + colonoscopy (to exclude Crohn's) [1]
Anatomy not obviousMRI pelvis or endoanal USS [1]
Suspected Crohn's diseaseColonoscopy + MRI and EAUS + bloods (CRP, albumin, FBC) [3][8]
Suspected malignancyEUA with biopsy + MRI pelvis for staging
Suspected TBHistology (caseating granulomata), AFB staining/culture, CXR, IGRA
Post-abscess drainagePus C/ST → gut flora predicts fistula [4]
Pre-existing incontinenceEndoanal USS or MRI (sphincter mapping) + anorectal manometry

High Yield Summary

  1. Anorectal fistula is a clinical diagnosis — history (cyclical pain, discharge, recurrent abscess) + examination (external opening, cord-like tract, DRE).
  2. Goals of investigation: define anatomy of tract, classify simple vs complex, exclude underlying cause (Crohn's, TB, malignancy).
  3. Goodsall's rule predicts internal opening location: anterior = straight, posterior = curved to midline. Reliable within 3 cm of anal verge.
  4. Do NOT probe in clinic — probing is done at EUA under anaesthesia to avoid creating false passages.
  5. EUA is required before surgery — the definitive assessment combining probing, proctoscopy, and surgical planning.
  6. MRI pelvis is the gold standard imaging for complicated, recurrent, or anatomically unclear fistulae. It shows primary tract, secondary extensions, abscesses, and sphincter integrity.
  7. Endoanal USS is an alternative, especially good for sphincter assessment; enhanced with H₂O₂ injection through external opening.
  8. Imaging is usually not necessary for simple fistulae — clinical exam + EUA suffices.
  9. Colonoscopy is indicated whenever Crohn's disease is suspected.
  10. Pus C/ST after abscess I&D: gut flora = fistula likely; skin flora = reassurance.
  11. Always send fistula tract tissue for histology — exclude TB (caseating granuloma), Crohn's (non-caseating), and malignancy.

Active Recall - Anorectal Fistula: Diagnosis and Investigations

1. What are the three goals of investigating an anorectal fistula as stated in the lecture slides?

Show mark scheme

1. Define anatomy of the pathological process (abscess and fistula). 2. Help in diagnosis and assess severity of disease. 3. Exclude diseases in the proximal bowel and associated bowel problems such as inflammatory bowel disease.

2. When is MRI pelvis indicated in the workup of anorectal fistula? Name three specific scenarios from the lecture slides.

Show mark scheme

1. Complicated high fistula. 2. Recurrent fistula. 3. When anatomy is not obvious. Also indicated in perianal Crohn's disease where MRI and EAUS are necessary before definitive treatment.

3. Describe the key steps performed during Examination Under Anaesthesia for an anorectal fistula.

Show mark scheme

Visual inspection of perianal area. DRE with relaxed sphincter to assess internal opening and sphincter integrity. Proctoscopy to identify internal opening. Fistula probing — gentle passage of probe from external to internal opening to classify tract. Assessment of sphincter bulk around tract. Optional injection of H2O2 or methylene blue through external opening. Must be performed with caution to avoid creating false passage.

4. Why should you NOT probe a fistula in the outpatient clinic?

Show mark scheme

Risk of creating a false passage by penetrating the fistula wall, causing pain without anaesthesia, and incomplete assessment. Probing should be done under general anaesthesia during EUA where the sphincter is relaxed, the patient is comfortable, and the surgeon can assess the full anatomy and proceed to definitive surgery if appropriate.

5. How does endoanal ultrasound visualisation improve with hydrogen peroxide injection, and what does it show?

Show mark scheme

H2O2 is injected via the external opening. The microbubbles appear hyperechoic (bright) on ultrasound, enhancing the visibility of the fistula tract against the surrounding hypoechoic tissue. This helps delineate the primary tract course and identify the internal opening.

6. A patient had an anorectal abscess drained. Pus culture grew E. coli and Bacteroides. What does this imply and what is your next step?

Show mark scheme

Gut flora on pus culture implies communication between the abscess cavity and the anal canal lumen, meaning fistula formation is likely. Next step: arrange follow-up in 6-12 weeks to reassess for fistula. If persistent discharge or induration, proceed to EUA and definitive fistula management.


References

[1] Lecture slides: GC 179. Anal pain perianal lesions and sepsis.pdf (p4, p13, p17, p18, p19, p57) [2] Senior notes: felixlai.md (Anorectal fistulas — Diagnosis section) [3] Senior notes: maxim.md (Anal fistula — Assessment section) [4] Senior notes: maxim.md (Anorectal abscess — Management, Pus C/ST) [5] Senior notes: felixlai.md (Anorectal abscess — Diagnosis section) [8] Lecture slides: Inflammatory bowel disease.pdf (p45)

Management of Anorectal Fistula

Overarching Principles

Before we discuss specific procedures, let's establish the fundamental management philosophy. Every decision in fistula surgery revolves around one tension:

Goal of surgery is to eradicate the fistula while preserving fecal continence [2].

This is the central trade-off. The more aggressively you divide sphincter muscle, the better the cure rate — but the higher the risk of incontinence. The more you try to preserve sphincter, the lower the cure rate — but incontinence is avoided. Every treatment modality exists on this spectrum.

Three pre-operative requirements must be met [2][3]:

  1. Probing of the fistula is required before surgery to determine its anatomy [2] — this is done at EUA, not in clinic.
  2. Active sepsis must be controlled first — if there is an undrained abscess, drain it before definitive fistula surgery. Operating on an inflamed, septic field increases recurrence and complication rates.
  3. Underlying disease must be addressed — Crohn's fistulae are managed very differently from cryptoglandular ones (medical-first approach).

Management Algorithm


Treatment Modalities

A. Conservative / Supportive Measures

These are adjunctive — no fistula will heal with conservative measures alone (except some Crohn's fistulae with biologics), but they support surgical healing.

Lifestyle modification [2]:

  • Avoid constipation — hard stools traumatise the healing wound and internal opening. Use fibre supplementation, adequate fluid intake, stool softeners.
  • Maintain proper anal hygiene — reduce bacterial load around the wound. Sitz baths (warm water soaks) after defecation promote wound cleanliness and comfort.

B. Surgical Treatment — Cryptoglandular Fistulae

1. Fistulotomy (Laying Open)

Fistulotomy/fistulectomy for simple low fistula [1].

The principle: If you can safely divide the tissue overlying the fistula tract without causing incontinence, you lay the tract open to heal from the base up (secondary intention healing). This is called "fistulotomy" — fistula + Greek -tomē = "cutting."

Technique [2][3]:

  1. A fistula probe is inserted into the external opening and gently passed along the tract to the internal opening.
  2. Most critical step is to identify and curette the internal opening to reduce the risk of recurrence [2] — remember, the internal opening is the source of ongoing cryptoglandular infection. If you don't eliminate it, the fistula recurs.
  3. An incision is made over the entire length of the fistula using the probe as a guide → all overlying tissue (skin, subcutaneous tissue, and the involved portion of sphincter) is divided.
  4. The tract is gently curetted to remove granulation tissue.
  5. Marsupialization of tract is preferred as it may speed up wound healing [2] — the edges of the laid-open wound are sutured to the base with absorbable sutures, reducing the wound surface area and accelerating healing.
  6. The wound is packed with gauze and covered with dressing → heals by secondary intention.
FeatureDetails
IndicationSimple fistula with low risk of incontinence [3]: superficial, intersphincteric (Type I), low transsphincteric (Type II) involving < 30% EAS
Success rateHealing in > 90% of patients [2]
ContraindicationsContraindicated in patients with preexisting incontinence [2]. Complex fistulae (≥ 30% EAS, suprasphincteric, extrasphincteric). Women with anterior fistulae (thin anterior sphincter). Crohn's-associated fistulae (risk of poor healing).
ComplicationRisk of incontinence should be informed [1]. Sphincter injury [3]. Recurrence (~2–8% for simple fistulae).

Fistulotomy vs Fistulectomy

Fistulotomy = laying open the tract (incision along the tract). Fistulectomy = excising the entire tract (cutting it out). Fistulotomy is preferred because fistulectomy creates a larger wound, takes longer to heal, and has the same cure rate. Fistulectomy may be useful when histological examination of the tract is needed (e.g., to exclude malignancy or Crohn's).


2. Seton Techniques

A seton (from Latin seta = "bristle") is a thread, suture, or loop of material passed through the fistula tract. Setons serve different purposes depending on the type used.

a. Loose (Draining / Non-cutting) Seton

Loose Seton for 6 weeks as a first-stage procedure + secondary sphincter-sparing procedure [3].

Why use it?

  • Establish drainage and eradicate the septic focus [3] — the seton keeps the tract open, allowing continuous drainage of pus. This prevents re-accumulation of abscess.
  • Preserve sphincter mechanism [3] — no muscle is divided.
  • Acts as a bridge to definitive surgery once inflammation has settled.

Technique:

  • Loose seton is usually inserted at EUA [3].
  • Material: silastic vessel loop [3] — a soft, elastic tube that sits comfortably in the tract.
  • The seton is threaded through the tract from external to internal opening and loosely tied. It is NOT tightened.
  • Left in place for ~6 weeks to allow the tract to mature and sepsis to resolve.

Indications:

  • High risk of incontinence / complex fistula [3].
  • Active sepsis with complex fistula — drain first, definitive surgery later.
  • Crohn's-associated fistula (often left as a long-term draining seton if the patient is asymptomatic with the seton in place).
b. Cutting (Tight / Snug) Seton

Principle: The seton is progressively tightened at regular intervals → it slowly cuts through the sphincter muscle while fibrosis occurs behind it → the sphincter is divided gradually with simultaneous scarring, preserving some degree of continence [2][3].

  • Cutting seton = elastic tightened regularly → slowly cut through the tract to cause scarring [3].
  • Think of it like a cheese wire slowly cutting through a block — as it cuts forward, scar tissue forms behind it, maintaining structural support.

Advantage: Lower incontinence rate than single-stage fistulotomy for complex fistulae. Disadvantage: Painful (each tightening causes discomfort), multiple clinic visits, still a risk of incontinence (~10–20%), largely falling out of favour in modern practice compared to sphincter-sparing techniques.


3. Sphincter-Sparing Procedures

These are for complicated high fistula or transsphincteric fistula with significant amount of muscle involvement [1].

a. Endorectal Advancement Flap

Endorectal advancement flap [1].

Principle: Close the internal opening by a mucosal flap → allow the fistula tract to heal and close [3]. By obliterating the internal opening (the source of infection), you remove the driver of the fistula without dividing any sphincter muscle.

Technique:

  1. A flap of rectal mucosa, submucosa, and sometimes a small cuff of internal sphincter is raised above the internal opening.
  2. The internal opening is curetted and closed.
  3. The flap is advanced downward to cover the closed internal opening and sutured in place.
  4. The external opening is left open to drain.
FeatureDetails
IndicationHigh transsphincteric fistula (without pre-existing incontinence), suprasphincteric fistula (Type III) — should be treated with endoanal advancement flaps [2]
Success rate~60–80%
AdvantageNo sphincter division; good for Crohn's if tissue quality is adequate
LimitationRequires healthy, non-inflamed rectal mucosa (poor results in active proctitis/Crohn's with rectal inflammation)
b. LIFT — Ligation of Intersphincteric Fistula Tract

Ligation of intersphincteric fistula tract (LIFT) [1].

Principle: The fistula tract passes through the intersphincteric space (between IAS and EAS) in transsphincteric fistulae. LIFT involves making an incision in the intersphincteric groove, identifying the tract as it crosses this space, ligating (tying off) the tract on both sides, and dividing it. This seals the internal opening side and allows the external tract to drain and collapse.

Technique:

  1. Incision in the intersphincteric groove.
  2. Identify the fistula tract in the intersphincteric plane.
  3. Ligate the tract close to the internal opening.
  4. Ligate the tract close to the external sphincter side.
  5. Divide the tract between the two ligatures.
  6. Curette the external component and leave it open for drainage.
FeatureDetails
IndicationTranssphincteric fistulae (Type II). Especially when the internal opening is distal to the dentate line or with pre-existing incontinence [3].
ContraindicationType III (suprasphincteric) — NOT treated by LIFT since there is no intersphincteric fistula tract [2] (the tract goes OVER the top of the sphincter, not through the intersphincteric space)
Success rate~60–75%
AdvantageMinimal pain, no sphincter division, outpatient procedure, short recovery

Why Can't You LIFT a Suprasphincteric Fistula?

The LIFT procedure works by intercepting the tract in the intersphincteric plane. A suprasphincteric fistula (Type III) travels upward in the intersphincteric plane, then over the top of the puborectalis/EAS, and descends through the ischiorectal fossa — it doesn't cross the intersphincteric space at the level where LIFT is performed. There is no intersphincteric tract to ligate. Use an advancement flap instead [2].

c. Anal Fistula Plug

Anal fistula plug [1].

Principle: A bioabsorbable plug (made of porcine small intestinal submucosa or synthetic material) is inserted into the fistula tract from the internal opening. It acts as a scaffold for tissue ingrowth, occluding the internal opening and allowing the tract to close.

FeatureDetails
IndicationTranssphincteric or complex fistulae as an alternative to advancement flap/LIFT
Success rateVariable (~30–60%) — lower than fistulotomy or advancement flap
AdvantageNo sphincter division, minimal morbidity, repeatable
LimitationHigh plug extrusion rate, lower success compared to LIFT/advancement flap
d. Fibrin Sealant

Fibrin sealant [3].

Principle: Fibrin glue is injected into the fistula tract to obliterate it. The glue solidifies and acts as a matrix for tissue ingrowth.

FeatureDetails
Success rateLow (~15–40%)
AdvantageMinimally invasive, no sphincter risk, can be repeated
LimitationPoor long-term results; best considered as an adjunct or for patients who refuse more invasive surgery
e. Modified Hanley Procedure

Modified Hanley procedure: horseshoe fistulas [3].

Principle: Horseshoe fistulae have a primary tract (usually posterior midline) with extensions through the deep postanal space into both ischiorectal fossae. The Modified Hanley procedure involves:

  1. Laying open the deep postanal space (posterior midline) to address the primary tract and internal opening.
  2. Counter-incisions over each ischiorectal fossa extension for drainage.
  3. The posterior midline component is laid open; the lateral extensions are drained and allowed to heal by secondary intention.

4. Newer / Emerging Treatment Modalities

Other treatment modalities from the lecture slides [1]:

ModalityPrinciple
Video-assisted anal fistula treatment (VAAFT)A fistuloscope (small endoscope) is inserted through the external opening to visualise the entire tract. The tract is cauterised/ablated under direct vision. The internal opening is then closed with a stapler or suture. Advantage: direct visualisation, identifies secondary tracts missed by MRI.
FiLaC (Fistula tract Laser Closure)A radial-emitting laser fibre is introduced into the tract and fired as it is slowly withdrawn → destroys the epithelial lining of the tract, promoting collapse and closure. Advantage: sphincter-sparing, minimally invasive.
Permacol paste injectionInjection of a collagen-based paste (derived from porcine dermis) into the tract to obliterate it. Acts as a scaffold for tissue ingrowth.
Stem cell treatmentInjection of mesenchymal stem cells (e.g., darvadstrocel/Alofisel — adipose-derived stem cells) into the fistula tract. Mechanism: stem cells promote local immunomodulation and tissue repair. Indication: primarily studied in Crohn's perianal fistulae refractory to conventional therapy. EMA-approved (2018) for complex perianal fistulae in Crohn's disease.

C. Management by Parks Classification — Summary Table

Parks TypeDesignationSurgical Approach
SuperficialSimpleFistulotomy
Type I — IntersphinctericSimpleFistulotomy [1][2]
Type II — Low transsphincteric ( < 30% EAS)SimpleFistulotomy [1][2]
Type II — High transsphincteric (≥ 30% EAS)ComplexSeton (staged) → LIFT or Advancement flap [1][2][3]
Type III — SuprasphinctericComplexAdvancement flap (NOT LIFT — no intersphincteric tract) [2]
Type IV — ExtrasphinctericComplexFaecal diversion or proctectomy [2][3]
HorseshoeComplexModified Hanley procedure or advancement flap [3]

D. Management of Perianal Crohn's Disease Fistulae

Crohn's perianal fistulae are a special category — the approach is fundamentally medical-first, with surgery playing a supportive/drainage role [5][8][9].

Perianal CD management [8][9]:

Step 1: Control Infection

  • Metronidazole/ciprofloxacin for infection control [9]
    • Why antibiotics? Reduce the bacterial load driving the inflammatory process. Metronidazole and ciprofloxacin penetrate well into pelvic/perianal tissue. Used as bridge therapy until immunomodulators/biologics take effect.
    • From CD medical notes: Antibiotics are indicated in perianal diseases such as fistula [10].

Step 2: Drain Any Abscess

  • Abscess — simple drainage [9]
    • I&D under GA. Do NOT perform definitive fistula surgery at this stage — tissue is inflamed, anatomy distorted.

Step 3: Manage the Fistula Based on Complexity

  • Simple fistula — fistulotomy [9]
  • Complex fistula [9]:
    • Seton insertion for drainage — loose seton to control sepsis and maintain drainage.
    • Azathioprine — immunomodulator to reduce Crohn's inflammation [8][9].
    • BiologicsAnti-TNF +/- AZA and/or seton drainage [8]. Give biologics after drainage of pus to close the fistula tract [5].
      • Why biologics after drainage? If you give biologics (which suppress immune response) while there is an undrained abscess, you risk uncontrolled sepsis. Drain first → control sepsis → then introduce biologics to promote fistula closure.
      • Must screen for TB with CXR/QuantiFERON-TB Gold + HBV with HBsAg before starting anti-TNF [10].
    • Colostomy or proctectomy — if all else fails [9].
      • If failed, consider surgery (defunctioning stoma ± proctectomy) [5].

Enterocutaneous Fistula in Crohn's — uses the SNAP principle [2][10]:

  • Sepsis control: Antibiotics + abscess drainage [11]
  • Nutrition support: High vs low output assessment, TPN aids closure [11]
  • Anatomy: CTE or MRE to delineate anatomy [11]
  • Procedure: Medication adjustment, closure with biological agents, en-bloc resection of involved bowel and fistula [11]

SNAP Mnemonic for Fistula Management in Crohn's

Sepsis control → Nutrition support → Anatomy delineation → Procedure (medical or surgical closure). This applies to enterocutaneous fistulae but the principle of "drain first, nourish, image, then treat" is universal.


E. Management of Anorectal Abscess (Acute Phase)

Since abscess and fistula are the same disease at different time points, managing the abscess correctly can prevent or set up proper management of the subsequent fistula.

Treatment of anorectal abscess [1][4]:

  • Incision and drainage of abscess [1]
  • Little role for antibiotics except in patients with severe cellulitis, valvular heart disease, prosthetic heart valves, and immunosuppression [1]
  • ? Primary fistulotomy [1] — if a fistula is clearly identified at the time of abscess drainage (e.g., probe passes easily from abscess to internal opening), some surgeons will perform a primary fistulotomy at the same sitting. This is controversial and typically only done for simple, low fistulae with clearly identified anatomy.
  • Drainage approach by site [4]:
    • Perianal abscess: skin incision close to the anal verge.
    • Ischiorectal abscess: buttock skin incision → drain as close to sphincter complex as possible to minimise the length of a potential fistula tract.
    • Intersphincteric abscess: rectal incision (internal sphincterotomy) → drain transanally to avoid creating an extrasphincteric fistula [4].

Why Drain Intersphincteric Abscess Transanally?

If you drain an intersphincteric abscess through the perianal skin (externally), the drainage tract would have to cross the entire external sphincter from inside to outside → you have iatrogenically created a transsphincteric or extrasphincteric fistula. By draining it transanally (through the rectal wall into the intersphincteric space), the drainage path stays within the intersphincteric plane — no sphincter is crossed [4].


Comprehensive Summary: Treatment Selection Decision Table

ScenarioFirst-Line TreatmentKey Consideration
Simple fistula, no incontinence riskFistulotomy +/- marsupialization> 90% cure rate
Complex fistula with active sepsisLoose seton for 6 weeks → staged sphincter-sparing procedureMust control sepsis before definitive surgery
High transsphincteric, no incontinenceAdvancement flapRequires healthy rectal mucosa
High transsphincteric, pre-existing incontinenceLIFT or advancement flapAvoid any further sphincter compromise
Suprasphincteric (Type III)Advancement flapNOT LIFT — no intersphincteric tract
Extrasphincteric (Type IV)Faecal diversion or proctectomyUsually not cryptoglandular; think Crohn's/iatrogenic
Horseshoe fistulaModified Hanley procedureAddress posterior midline primary tract + lateral extensions
Crohn's simple fistulaFistulotomy (after sepsis control)Medical therapy adjunct
Crohn's complex fistulaSeton + azathioprine + anti-TNFBiologics AFTER drainage; screen for TB/HBV first
Crohn's refractoryDefunctioning stoma ± proctectomyLast resort

High Yield Summary

  1. Goal: eradicate fistula while preserving faecal continence — every surgical choice reflects this trade-off.
  2. Simple fistula → Fistulotomy ( > 90% cure). Contraindicated with pre-existing incontinence.
  3. Risk of incontinence should be informed before any fistula surgery.
  4. Complex fistula → Staged approach: Loose seton first (6 weeks, drainage, sepsis control) → then sphincter-sparing procedure.
  5. Sphincter-sparing options: Advancement flap, LIFT, fistula plug, fibrin sealant, cutting seton, Modified Hanley (horseshoe).
  6. LIFT cannot be used for suprasphincteric (Type III) fistulae — no intersphincteric tract exists. Use advancement flap instead.
  7. Extrasphincteric (Type IV) fistulae are typically not cryptoglandular → usually Crohn's or iatrogenic → faecal diversion or proctectomy.
  8. Crohn's perianal fistula: Medical-first approach — metronidazole/ciprofloxacin → drain abscess → seton → azathioprine + anti-TNF after pus drainage → defunctioning stoma/proctectomy if failed.
  9. SNAP principle for enterocutaneous fistula: Sepsis → Nutrition → Anatomy → Procedure.
  10. Newer modalities: VAAFT, FiLaC, Permacol paste, stem cell therapy (darvadstrocel for Crohn's perianal fistulae).
  11. Most critical step in fistulotomy: identify and curette the internal opening — failure to do so → recurrence.

Active Recall - Anorectal Fistula: Management

1. What is the overarching goal of anorectal fistula surgery, and what is the first-line treatment for a simple fistula?

Show mark scheme

Goal: eradicate the fistula while preserving faecal continence. First-line for simple fistula: fistulotomy (laying open) with marsupialization. Success rate over 90%. Must identify and curette the internal opening to reduce recurrence.

2. Why is LIFT contraindicated for suprasphincteric (Type III) fistulae?

Show mark scheme

LIFT works by ligating the fistula tract in the intersphincteric plane. A suprasphincteric fistula tracks upward in the intersphincteric plane then over the top of the EAS/puborectalis and descends through the ischiorectal fossa. There is no intersphincteric tract at the accessible surgical level to ligate. Advancement flap is used instead.

3. Outline the step-wise management of complex perianal fistula in Crohn's disease as per the lecture slides.

Show mark scheme

Step 1: Metronidazole/ciprofloxacin for infection control. Step 2: Simple drainage of any abscess. Step 3: Seton insertion for drainage of complex fistula. Step 4: Azathioprine. Step 5: Biologics (anti-TNF) given after pus is drained. Step 6: If failed, colostomy or proctectomy. Must screen for TB and HBV before starting anti-TNF.

4. A loose draining seton is placed in a complex fistula. What is its purpose, what material is used, and how long is it left in?

Show mark scheme

Purpose: establish drainage, eradicate septic focus, preserve sphincter mechanism, act as bridge to definitive sphincter-sparing surgery. Material: silastic vessel loop. Duration: approximately 6 weeks. Inserted at EUA. It is NOT tightened (unlike a cutting seton).

5. Name four sphincter-sparing procedures for complex anorectal fistulae mentioned in the lecture slides.

Show mark scheme

1. Seton (staged procedure). 2. Endorectal advancement flap. 3. Anal fistula plug. 4. LIFT (Ligation of intersphincteric fistula tract). Also acceptable from slides: cutting seton, fibrin sealant, Modified Hanley procedure.

6. Why must an intersphincteric abscess be drained transanally rather than through the perianal skin?

Show mark scheme

If drained through perianal skin externally, the drainage tract would cross the entire external sphincter, iatrogenically creating a transsphincteric or extrasphincteric fistula. Draining transanally via internal sphincterotomy keeps the drainage path within the intersphincteric plane, avoiding sphincter transgression.


References

[1] Lecture slides: GC 179. Anal pain perianal lesions and sepsis.pdf (p53, p58, p60, p61) [2] Senior notes: felixlai.md (Anorectal fistulas — Treatment section) [3] Senior notes: maxim.md (Anal fistula — Definitive treatment section) [4] Senior notes: maxim.md (Anorectal abscess — Management section) [5] Senior notes: maxim.md (Surgical procedures for CD — Perianal CD section) [8] Lecture slides: Inflammatory bowel disease.pdf (p45) [9] Lecture slides: Inflammatory bowel disease.pdf (p48) [10] Senior notes: felixlai.md (Crohn's disease — Treatment section, Antibiotics, Biologics) [11] Lecture slides: Inflammatory bowel disease.pdf (p33, p34)

Complications of Anorectal Fistula

Complications can be divided into two broad categories: complications of the disease itself (untreated or inadequately treated fistula) and complications of surgical treatment. Understanding both is essential because the management of fistula is essentially a balancing act — you're always weighing the risks of leaving the disease untreated against the risks of the surgery intended to fix it.


A. Complications of the Disease Itself

1. Recurrent Anorectal Abscess

Mechanism: The fistula maintains a persistent communication between the anal canal lumen (via the internal opening at the infected crypt) and the perianal tissues. Faecal bacteria continuously seed the tract → intermittent accumulation of pus → cyclical abscess formation [2][3].

  • This is the most common complication of an untreated fistula.
  • Each recurrence can extend the septic process into new tissue planes → the fistula becomes progressively more complex (new secondary tracts, horseshoe extensions).
  • Can expand into adjacent tissues including ischiorectal and supralevator space or even progress into generalised systemic infection [2].

Why does this matter? Each cycle of abscess → drainage → recurrence creates more scarring and fibrosis around the sphincter complex, making eventual definitive surgery more difficult and increasing the risk of incontinence from the surgery itself.


2. Complex Fistula Formation / Branching

Mechanism: Undrained or inadequately drained sepsis tracks along paths of least resistance through perianal/perirectal tissue planes. Over time:

  • A simple intersphincteric fistula can extend through the EAS → becomes transsphincteric.
  • Pus can track through the deep postanal space (behind the anal canal) from one ischiorectal fossa to the other → horseshoe fistula.
  • Multiple secondary tracts develop → complex fistula with multiple external openings.

The more complex the fistula becomes, the harder it is to treat surgically without damaging the sphincter, and the higher the recurrence rate.


3. Perianal Sepsis and Systemic Infection

Mechanism: If the external opening blocks and there is no adequate drainage path, pus accumulates under pressure. This can progress to:

  • Cellulitis of the perianal skin and perineum.
  • Necrotising fasciitis of the perineum (Fournier's gangrene) — a life-threatening surgical emergency. Polymicrobial infection spreads rapidly through subcutaneous tissues and fascial planes. Particularly dangerous in immunocompromised patients (diabetes, HIV, on immunosuppressants) and those with perianal Crohn's disease.
  • Bacteraemia / sepsis — the perianal region is richly vascular; uncontrolled infection can seed the bloodstream.

Fournier's Gangrene — Lethal Complication

Any patient with an anorectal abscess or fistula who develops rapidly spreading perineal erythema, crepitus (subcutaneous gas), necrotic skin, systemic toxicity (fever, tachycardia, hypotension), or disproportionate pain should be suspected of having Fournier's gangrene. This requires emergency surgical debridement + broad-spectrum IV antibiotics + ICU support. Mortality is 20–40% even with treatment.


4. Chronic Perianal Skin Changes

Mechanism: Persistent discharge from the external opening causes:

  • Chronic dermatitis and maceration of the perianal skin — from continuous moisture and irritant contact with pus/faecal material.
  • Pruritus ani — secondary to chronic skin inflammation and excoriation [2].
  • Scarring and fibrosis — repeated cycles of inflammation and healing lead to thickened, indurated perianal skin.

5. Malignant Transformation (Rare but Important)

Mechanism: Chronic inflammation over many years (typically > 10 years of untreated fistula) can lead to squamous cell carcinoma or mucinous adenocarcinoma arising in the fistula tract. This is analogous to other chronic inflammatory conditions that predispose to malignancy (e.g., Marjolin's ulcer in chronic wounds, cholangiocarcinoma in PSC).

  • Extremely rare but well-documented in case reports.
  • Should be suspected in any long-standing fistula that suddenly changes character — increased pain, harder tissue, bloody rather than purulent discharge, rapid growth.
  • Always send fistula tract curettings for histology at the time of surgery to exclude occult malignancy.

6. Complications Specific to Crohn's-Associated Fistulae

Crohn's perianal fistulae carry additional disease-specific complications due to the transmural inflammatory nature of the underlying disease [12][8]:

  • Fistula formation (additional types beyond perianal) [12]:
    • Enteroenteric fistula → palpable mass [12]
    • Enterovesical fistula → urinary symptoms due to UTI (pneumaturia = air in urine, faecaluria = faeces in urine) [12][13]
    • Enterovaginal fistula → passage of gas or faeces through vagina [12][13]
    • Enterocutaneous fistula → drainage of bowel contents to surface of skin [12][13]
    • Retroperitoneal fistula → psoas abscess or ureteral obstruction with hydronephrosis [12]
  • Abscess formation — sinus tracts may lead to abscess → acute localised peritonitis with fever, abdominal pain, and tenderness → perforation can lead to diffuse peritonitis [12].
  • Perianal disease — formation of skin tags, anal fissures, perirectal abscess, and anorectal fistulas [12]. 83% of perianal Crohn's patients required surgery [8].
  • Anal stenosis / stricture — chronic fibrosis from repeated inflammation narrows the anal canal.

B. Complications of Surgical Treatment

This is where the exam loves to test you — the complications of each surgical procedure and why they occur.

1. Faecal Incontinence

This is the most feared complication of fistula surgery and the primary reason complex fistulae require sphincter-sparing approaches rather than fistulotomy.

Risk of incontinence should be informed before any fistula surgery [1].

Mechanism: Division of the anal sphincter muscle during surgery → loss of the sphincter's ability to maintain closure → involuntary leakage of gas, liquid stool, or solid stool.

ProcedureIncontinence RiskWhy?
Fistulotomy for simple fistulaLow (~0–10%)Only a small amount of IAS and/or superficial EAS is divided for low fistulae
Fistulotomy for complex fistulaHIGH (contraindicated)Would require dividing > 30% of EAS → significant loss of voluntary squeeze pressure
Cutting setonModerate (~10–20%)Gradually divides the sphincter — fibrosis forms behind, but the degree of continence preservation is unpredictable
LIFTLow (~0–5%)No sphincter is divided; dissection is in the intersphincteric plane
Advancement flapLow (~5–10%)Sphincter not divided, but mobilisation of the flap may cause minor IAS injury

Risk factors for incontinence after fistula surgery:

  • Pre-existing sphincter damage (previous obstetric injury, prior fistula surgery, prior lateral internal sphincterotomy for fissure).
  • Female sex — thinner, shorter anterior sphincter.
  • Anterior fistula in women — even a small division of the anterior EAS can cause incontinence.
  • Recurrent fistula surgery — each operation removes more sphincter tissue; cumulative damage.
  • Older age — reduced baseline sphincter tone due to age-related muscle atrophy and pudendal neuropathy.

The Cumulative Sphincter Damage Problem

Each fistula operation takes a bit more sphincter. A patient who has had three fistulotomies may have no functioning EAS left. This is why the initial operation must be done correctly — identify the tract anatomy precisely, choose the right procedure, and avoid unnecessary sphincter division. Getting it wrong the first time starts a cascade of increasingly difficult re-operations.


2. Recurrence

This is the second most common complication. Recurrence rates vary significantly by procedure:

ProcedureRecurrence RateWhy?
Fistulotomy~2–8%Low because the entire tract is laid open and the internal opening is curetted. Recurrence usually due to missed internal opening or unidentified secondary tract.
Advancement flap~20–40%Flap may fail to adhere or internal opening may not be completely obliterated. Higher in active Crohn's/proctitis.
LIFT~25–40%The ligated intersphincteric portion may reopen; the external component may persist.
Fistula plug~40–70%High plug extrusion rate → tract reopens.
Fibrin sealant~60–85%Sealant often reabsorbed before the tract heals.
Cutting seton~5–15%Low because the tract is progressively destroyed.

Common reasons for recurrence:

  1. Failure to identify the internal opening — if the cryptoglandular source is not addressed, the infection cycle restarts. The most critical step is to identify and curette the internal opening [2].
  2. Missed secondary tracts — undrained extensions continue to harbour infection. This is why MRI is essential for complex fistulae.
  3. Inadequate drainage of associated abscess — residual sepsis prevents healing.
  4. Underlying Crohn's disease not treated medically — ongoing transmural inflammation drives recurrence regardless of surgical technique. More complicated courses of fistula tract in Crohn's [8].
  5. Creation of false passage during probing → new iatrogenic tract that is not addressed.

3. Sphincter Injury (Without Overt Incontinence)

Complications: sphincter injury [3].

Even when patients do not report overt incontinence, fistula surgery can cause subclinical sphincter damage detectable on endoanal ultrasound or anorectal manometry. This may only become clinically significant later in life when age-related sphincter degeneration further reduces continence reserves.


Fistulotomy wounds heal by secondary intention (from the base up, without primary closure). This creates specific wound-related issues:

  • Delayed wound healing: Fistulotomy wounds in the perianal region take 6–12 weeks to heal fully. The perineum is a moist, contaminated environment (faecal bacteria, constant movement from sitting/walking), which slows healing.
  • Wound infection: Despite the wound being intentionally left open, secondary bacterial overgrowth can cause wound cellulitis or a new abscess.
  • Bleeding: Minor postoperative bleeding from the granulating wound bed is common. Significant bleeding (reactionary or secondary) is uncommon but may require return to theatre for haemostasis.
  • Anal stenosis / stricture: Excessive fibrosis during wound healing can narrow the anal canal → difficulty with defecation, thin stools, straining. More common with extensive fistulotomy (large wound) or circumferential wounds. May require finger or endoscopic balloon dilatation [14].

5. False Passage Creation

Mechanism: During EUA, if the fistula probe is forced through the tract wall rather than following the true tract, a new iatrogenic passage is created through tissue that was previously uninvolved [2].

  • Performed with caution to avoid creating a false passage by penetrating the fistula wall [2].
  • This can convert a simple fistula into a complex one, or create a new fistula in addition to the original one.
  • Avoided by: gentle probing, using a malleable (not rigid) probe, never forcing the probe.

6. Complications Specific to Certain Procedures

ProcedureSpecific ComplicationMechanism
Cutting setonPain at each tightening; chronic perianal discomfortThe seton is physically cutting through tissue — generates inflammation and pain
Advancement flapFlap dehiscence/necrosisInadequate blood supply to the flap; tension on suture line; active proctitis (especially Crohn's)
LIFTIntersphincteric abscessLigation may trap bacteria in the intersphincteric space if the tract is not adequately debrided
Fistula plugPlug extrusion/dislodgementThe plug is a foreign body — can be extruded by peristalsis, defecation, or rejection response
Seton (loose, draining)Discomfort, mucoid discharge, perianal irritationForeign body in the tract causes chronic low-grade inflammation; discharge along the seton
Faecal diversion (stoma)All standard stoma complicationsSee below

For extrasphincteric fistulae (Type IV), refractory Crohn's perianal disease, or salvage procedures, a defunctioning stoma may be created. This carries its own set of complications [2][14]:

Early ( < 30 days):

  • Stomal bleeding
  • Stomal necrosis (ischaemia of the bowel stoma — appears dark/dusky)
  • Stomal retraction (stoma sinks below skin level → appliance leakage)
  • Mucocutaneous separation (dehiscence of the stoma-skin junction)
  • Skin irritation and dermatitis (especially ileostomy — high-output alkaline enzymatic effluent is highly corrosive to skin)

Late ( > 30 days):

  • Parastomal hernia (bowel herniates through the fascial defect around the stoma)
  • Stomal prolapse
  • Stomal stenosis

C. Summary: Complications at a Glance

CategoryComplicationMechanism / Key Point
Disease — UntreatedRecurrent abscessPersistent internal opening seeds bacteria → cyclical pus accumulation
Complex fistula formationSepsis tracks to new tissue planes; simple → complex
Perianal sepsis / Fournier's gangreneBlocked drainage → necrotising soft tissue infection — EMERGENCY
Chronic skin changesPersistent discharge → dermatitis, maceration, pruritus
Malignant transformationChronic inflammation > 10 years → SCC or mucinous adenocarcinoma (rare)
Disease — Crohn'sAdditional fistula typesEnteroenteric, enterovesical, enterovaginal, enterocutaneous, retroperitoneal
Abscess / peritonitisSinus tracts → abscess → perforation → peritonitis
Anal stenosisChronic perianal fibrosis
Surgery — GeneralFaecal incontinenceSphincter division → loss of continence; most feared complication
RecurrenceMissed internal opening, unidentified secondary tracts, inadequate sepsis control
Sphincter injuryAny procedure that involves or is adjacent to sphincter muscle
Delayed wound healingContaminated perineal environment; secondary intention healing takes 6–12 weeks
Wound infection / bleedingOpen wound in contaminated field
Anal stenosisExcessive fibrosis during healing
False passageForceful probing creates iatrogenic new tract
Surgery — StomaEarly: bleeding, necrosis, retraction, skin irritationStandard stoma complications when faecal diversion required
Late: parastomal hernia, prolapse, stenosisLong-term stoma complications

High Yield Summary

  1. Untreated fistula complications: recurrent abscess, complex fistula formation, perianal sepsis (Fournier's gangrene — emergency!), chronic skin changes, and rare malignant transformation.
  2. Faecal incontinence is the most feared surgical complicationrisk of incontinence should be informed before any fistula operation. Risk increases with: pre-existing sphincter damage, female sex, anterior fistula in women, recurrent surgery, older age.
  3. Recurrence is the second most common complication. The most critical step to prevent recurrence is identifying and curetting the internal opening at surgery.
  4. Common reasons for recurrence: missed internal opening, missed secondary tracts, inadequate sepsis drainage, untreated underlying Crohn's, iatrogenic false passage.
  5. Sphincter injury is a recognised complication of fistulotomy.
  6. Crohn's perianal fistulae carry additional risks: multiple fistula types (enterovesical → pneumaturia; enterovaginal → passage of gas/faeces per vagina; enterocutaneous → bowel content drainage to skin), abscess, peritonitis, anal stenosis.
  7. False passage creation during probing is preventable — always probe gently under anaesthesia, never force.
  8. Stoma complications apply when faecal diversion is required (early: bleeding, necrosis, retraction, skin irritation; late: parastomal hernia, prolapse, stenosis).

Active Recall - Anorectal Fistula: Complications

1. What is the most feared complication of anorectal fistula surgery, and name four risk factors for it?

Show mark scheme

Faecal incontinence. Risk factors: pre-existing sphincter damage, female sex (thinner anterior sphincter), anterior fistula in women, recurrent fistula surgery (cumulative sphincter loss), older age (age-related sphincter degeneration), complex/high fistula requiring more muscle division.

2. What is the single most critical step during fistulotomy to prevent recurrence, and why?

Show mark scheme

Identifying and curetting the internal opening. The internal opening at the infected anal crypt is the source of ongoing cryptoglandular infection. If it is not eliminated, bacteria continue to seed the tract and the fistula recurs. Other causes of recurrence include missed secondary tracts and inadequate abscess drainage.

3. A patient with a 15-year history of untreated anorectal fistula develops a hard, irregular, bleeding perianal mass. What complication has likely occurred and what investigation is needed?

Show mark scheme

Malignant transformation — squamous cell carcinoma or mucinous adenocarcinoma arising in the chronic fistula tract. Investigation: EUA with biopsy of the suspicious tissue for histological examination. MRI pelvis for staging if confirmed.

4. Explain why a false passage is dangerous during fistula probing and how it is prevented.

Show mark scheme

A false passage creates a new iatrogenic tract through previously uninvolved tissue, potentially converting a simple fistula into a complex one or creating an entirely new fistula. Prevented by: using a flexible/malleable probe, never forcing the probe, performing probing only under anaesthesia during EUA, and proceeding with caution.

5. Name four types of fistulae that can complicate Crohn's disease and their clinical presentations.

Show mark scheme

1. Enteroenteric fistula — palpable abdominal mass. 2. Enterovesical fistula — pneumaturia, faecaluria, recurrent UTI. 3. Enterovaginal fistula — passage of gas or faeces through vagina. 4. Enterocutaneous fistula — drainage of bowel contents to skin surface. 5. Retroperitoneal fistula — psoas abscess or ureteral obstruction with hydronephrosis. (Any four acceptable.)


References

[1] Lecture slides: GC 179. Anal pain perianal lesions and sepsis.pdf (p58) [2] Senior notes: felixlai.md (Anorectal fistulas — Treatment section; Anorectal abscess — Overview) [3] Senior notes: maxim.md (Anal fistula — Definitive treatment, Complications) [8] Lecture slides: Inflammatory bowel disease.pdf (p45) [12] Senior notes: felixlai.md (Crohn's disease — Signs and symptoms of complications) [13] Lecture slides: Inflammatory bowel disease.pdf (p33) [14] Senior notes: felixlai.md (Colorectal surgery — Complications section); Senior notes: maxim.md (Post-operative complications section)

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