Gram-negativeBacilliAnaerobes

Bacteroides fragilis

Encapsulated obligate anaerobic Gram-negative bacillus that is the most common anaerobic pathogen in humans, causing intra-abdominal abscesses, peritonitis, and bacteremia.

Organism Card

DomainMust know
Identity
  • G−ve obligate anaerobic rod [1][2]
  • Bacteroidaceae family; non-spore-forming
  • Most clinically important anaerobe from the GI tract
  • Normal flora of oral cavity and GI tract [1]
Lab discriminator
  • Strict anaerobe: requires anaerobic culture (anaerobic jar / chamber)
  • Growth on Bacteroides bile esculin (BBE) agar: bile-resistant (20% bile), esculin-hydrolysing
  • Catalase +ve (unusual for anaerobes); indole −ve
  • vs Fusobacterium: fusiform morphology, causes Lemierre's disease [1]
  • vs Clostridium: Clostridia are G+ve spore-forming anaerobes
Reservoir / transmission
  • GI tract coloniser — most abundant anaerobe in colonic flora [1]
  • Endogenous infection: breaches gut barrier → contiguous / haematogenous spread
  • No person-to-person transmission of clinical significance
  • Contamination from bowel perforation, surgery, or trauma
Key virulence
  • Polysaccharide capsule (capsular polysaccharide complex, esp. PSA) → abscess formation, anti-phagocytic
  • Superoxide dismutase & catalase → aerotolerance, survives brief O₂ exposure
  • Lipopolysaccharide (LPS) — atypical, low endotoxic activity vs Enterobacteriaceae
  • Succinic acid production → inhibits PMN killing
  • β-lactamase production → increasing antimicrobial resistance [1]
Clinical syndromes
  • Complicated intra-abdominal infections (abscess, secondary peritonitis) — often polymicrobial [1][3][4]
  • Liver abscess (ascending biliary infection route — mixed with E. coli, Klebsiella) [5]
  • Secondary bacterial peritonitis: polymicrobial culture ± Bacteroides = think bowel leak (vs monomicrobial SBP) [3]
  • Acute cholangitis bacteriology: listed alongside E. coli, Klebsiella, Enterobacter, Enterococcus [4]
  • Brain abscess (anaerobic component in mixed infection)
  • Aspiration pneumonia / lung abscess (foul-smelling sputum) [6]
  • Pelvic / tubo-ovarian abscess
  • Bacteraemia (anaerobic blood cultures; may → metastatic abscess)
Diagnosis
  • Specimen: pus / abscess fluid / peritoneal fluid / blood (anaerobic bottle)
  • Anaerobic culture is gold standard — transport rapidly in anaerobic transport medium
  • Foul-smelling pus or gas on imaging suggests anaerobic involvement
  • Pitfall: organism dies quickly with O₂ exposure → false-negative if delayed or improper transport
  • Gram stain: pale-staining G−ve rods; may be pleomorphic
Treatment
  • Expert practice tip: consider adding metronidazole in patients with severe intra-abdominal sepsis to cover Bacteroides fragilis [1][2]
  • Metronidazole = drug of choice for anaerobic coverage
  • Alternatives: carbapenems (imipenem, meropenem), β-lactam/β-lactamase inhibitor combos (piperacillin-tazobactam, amoxicillin-clavulanate)
  • Increasing antimicrobial resistance [1]: ↑β-lactamase production → resistant to penicillin, ampicillin, many cephalosporins
  • Intrinsically resistant to aminoglycosides (anaerobes lack O₂-dependent drug uptake)
  • Source control (surgical drainage of abscess / debridement) is essential alongside antibiotics
Prevention
  • Surgical prophylaxis: metronidazole added for colorectal / GI surgery to cover anaerobes
  • Antibiotic prophylaxis for PD patients undergoing colonoscopy with polypectomy: ampicillin + aminoglycoside ± metronidazole [7]
  • No vaccine available
  • Not a notifiable disease
Classic traps
  • Polymicrobial peritoneal culture with Bacteroides → think secondary bacterial peritonitis (bowel perforation), NOT SBP [3]
  • Foul-smelling discharge / gas-forming infection → think anaerobes (Bacteroides or Clostridium)
  • SBP = monomicrobial (E. coli, Klebsiella, Strep); polymicrobial = secondary [3]
  • Don't confuse with Fusobacterium: Fusobacterium → Lemierre's disease (IJV thrombophlebitis) [1]
  • Aminoglycosides have NO activity against anaerobes — common MCQ trap

Exam Intelligence

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