Neurology

Encephalitis

Encephalitis is inflammation of the brain parenchyma, typically caused by viral infection, presenting with altered mental status, fever, and focal neurological deficits.

Epidemiology

Relevant Anatomy and Function

Understanding why encephalitis produces specific clinical features requires knowing the functional anatomy of the brain regions preferentially targeted by different pathogens.

Aetiology (with Focus on Hong Kong)

Pathophysiology: direct invasion of host cells, post-infectious immune-mediated changes (ADEM) [1] — these are the two fundamental mechanisms.

A. Acute Viral Encephalitis (Most Common Category)

D. Post-Infectious/Autoimmune Encephalitis

Pathophysiology

Understanding the pathophysiology is essential because it explains every clinical feature you will see.

Classification

Clinical Features

A. Symptoms (with Pathophysiological Basis)

2. Features of Brain Parenchymal Involvement (The Defining Features of Encephalitis)

These are what distinguish encephalitis from meningitis:

B. Signs (with Pathophysiological Basis)

Differential Diagnosis of Encephalitis

The clinical approach to a patient with suspected encephalitis essentially boils down to answering two questions:

  1. Is this really encephalitis (brain parenchymal inflammation), or is something else mimicking it?
  2. If it is encephalitis, what is the aetiology?

The first question is about the syndromic differential — other conditions that can present with fever + altered mental status ± seizures ± focal neurological deficits. The second question is about narrowing down the cause once you've established that the brain parenchyma is genuinely inflamed.


A. Syndromic Differential: "Fever and Confusion" — What Else Could It Be?

This is directly from the GC lecture and is extremely high yield for in-house exams.

Differential Diagnosis of Patient with Fever and Confusion [8]:

  • CNS infections
  • Other non-CNS infections (+/- systemic involvement) with encephalopathy (septic, metabolic, toxic)
  • Sepsis in patients with primary psychiatric disorder
  • Autoimmune encephalitis (e.g. anti-NMDA receptor encephalitis)
  • Inflammatory disorders affecting the brain (e.g. vasculitis, cerebral lupus)
  • Sepsis with nonconvulsive status epilepticus
  • Thyroid storm

Encephalopathy – disorder of the brain resulting in an altered mental state (impaired cognition, orientation and consciousness) [8]

High Yield GC Exam Point: Encephalitis vs Encephalopathy

A critical distinction: encephalitis implies inflammation of the brain parenchyma (with CSF pleocytosis, MRI changes, etc.), while encephalopathy is a broader term meaning any disorder causing altered mental state — it does NOT require inflammation. Septic encephalopathy, metabolic encephalopathy, hepatic encephalopathy, and toxic encephalopathy are NOT encephalitis. The GC lecture explicitly defines encephalopathy as "disorder of the brain resulting in an altered mental state (impaired cognition, orientation and consciousness)" [8]. You must distinguish the two because the management is completely different.

Let us work through each differential systematically, explaining why each mimics encephalitis and how to differentiate them.


B. Differential WITHIN Encephalitis: Narrowing the Aetiology

Once you've established that this is encephalitis (brain parenchymal inflammation with CSF pleocytosis ± MRI changes ± EEG changes), you need to determine the cause. The differential narrows based on several clinical parameters:

E. Key Differentials in Specific Clinical Scenarios

References

[2] Senior notes: Maksim Medicine Notes, Section 9.6 CNS infections (p.196) [3] Senior notes: MBBS Final MB (Medicine) (Felix PY Lai), Encephalitis section (p.1199–1201) [4] Senior notes: MBBS Final MB (Pediatrics) (Felix PY Lai), Encephalitis section (p.518–520) [6] Senior notes: Block A - Electrolyte and Acid-Base Disorders, SIADH and Hyponatraemia (p.21) [8] Lecture slides: GC 051. Fever and confusion_meningitis and encephalitis; suppurative brain infection.pdf (p.3, p.45) [9] Senior notes: MBBS Final MB (Medicine) (Felix PY Lai), Meningitis section (p.1179–1181) [10] Senior notes: MBBS Final MB (Pediatrics) (Felix PY Lai), Meningitis section (p.500) [11] Senior notes: Ryan Ho Respiratory, TB meningitis section (p.79) [12] Senior notes: Block A - A jaundiced and incoherent patient_ liver failure (p.17); Ryan Ho GI, Hepatic encephalopathy (p.332) [13] Lecture slides: CFB_Neuro clinical skills demonstration_01.08.22_file to students.pdf (p.8) [14] Senior notes: Febrile seizures_ Clinical features and evaluation - UpToDate.pdf (p.19) [15] Senior notes: MBBS Final MB (Medicine) (Felix PY Lai), Stroke DDx (p.1221) [16] Senior notes: MBBS Final MB (Surgery) (Felix PY Lai), Stroke DDx (p.1148)

Investigation Modalities: Detailed Interpretation

1. Lumbar Puncture and CSF Analysis

This is the single most important investigation in suspected encephalitis.

CSF analysis by lumbar puncture: not diagnostic but can confirm presence of inflammatory disease of CNS [3][4] Opening pressure should be noted [3][4]

2. Neuroimaging

2. Empirical Treatment — The Cornerstone

3. Aetiology-Directed Definitive Treatment

Once investigations identify the cause, treatment is tailored accordingly.

4. Supportive Care and Complication Management

Complications of Encephalitis

Encephalitis is not just about the acute illness — it is about the cascade of complications that can occur during the acute phase and, critically, the long-term neurological sequelae that survivors carry. Understanding the pathophysiological basis of each complication is essential for anticipating, preventing, and managing them.

Neurological sequelae: difficulties in concentration, behavioural/speech disorder, memory loss [1] — only 61% survived without sequelae [1]. This means that roughly 4 in 10 survivors of encephalitis have lasting neurological impairment.

The complications of encephalitis can be divided into:

  1. Acute complications (during the illness)
  2. Long-term neurological sequelae (after recovery from the acute phase)
  3. Treatment-related complications (iatrogenic)

1. Acute Complications

2. Long-Term Neurological Sequelae

These are the complications that persist after the acute infection has resolved. They are among the most devastating consequences of encephalitis and are a major source of long-term disability.

Neurological sequelae: difficulties in concentration, behavioural/speech disorder, memory loss [1] Only 61% survived without sequelae [1]

References

[1] Senior notes: Ryan Ho Neurology, Section 7.2 Encephalitis (p.147–149) [2] Senior notes: Maksim Medicine Notes, Section 9.6 CNS infections — Complications (p.196–198) [3] Senior notes: MBBS Final MB (Medicine) (Felix PY Lai), Complications of Meningitis (p.1191–1193) [4] Senior notes: MBBS Final MB (Pediatrics) (Felix PY Lai), Complications of Meningitis (p.512) [5] Senior notes: Adrian Lui Pediatrics Notes, Status Epilepticus (p.126) [6] Senior notes: Block A - Electrolyte and Acid-Base Disorders, SIADH causes (p.21) [8] Lecture slides: GC 051. Fever and confusion_meningitis and encephalitis; suppurative brain infection.pdf (p.34, p.39, p.46) [19] Senior notes: Ryan Ho Neurology, Status Epilepticus (p.109) [21] Lecture slides: Handbook of Internal Medicine 2024.pdf, Autoimmune Encephalitis — Treatment (p.338) [23] Lecture slides: GC 081. Seizure and loss of consciousness Delirium and encephalopathy; epilepsy; coma and brain death; care of unconscious patients; electrophysiology I.pdf (p.69); GC 225. Neuroimmunological disorders of the central nervous system.pdf (p.26) [24] Senior notes: Ryan Ho Respiratory, TB meningitis — Complications (p.79) [25] Senior notes: Adrian Lui Pediatrics Notes, Chickenpox complications (p.478); MBBS Final MB (Medicine) (Felix PY Lai), Complications of chickenpox (p.1808); MBBS Final MB (Pediatrics) (Felix PY Lai), Complications of chickenpox (p.29) [26] Senior notes: MBBS Final MB (Medicine) (Felix PY Lai), Measles CNS complications (p.1824); MBBS Final MB (Pediatrics) (Felix PY Lai), Measles CNS complications (p.50) [27] Senior notes: Maksim Medicine Notes, Section 11.9 Autoimmune encephalitis — Prognosis (p.264)

High Yield Summary

  1. Definition: Encephalitis = inflammation of brain parenchyma. The hallmark is altered mental status distinguishing it from meningitis.
  2. Fever + neurological symptoms = CNS infection until proven otherwise [2].
  3. Most common sporadic cause: HSV-1 (temporal lobe predilection; treat empirically with IV aciclovir). Most common viral meningitis cause: enteroviruses.
  4. Two pathophysiological mechanisms: direct viral invasion vs post-infectious/autoimmune immune-mediated damage (ADEM, autoimmune encephalitis).
  5. Clinical features of encephalitis (vs meningitis): altered consciousness, seizures, focal neurological deficits (hemiparesis, aphasia, cerebellar ataxia), personality/behavioural change.
  6. SIADH is a common complication → hyponatraemia → worsens cerebral oedema and seizures.
  7. Status epilepticus is a feared complication — CNS infections (classically encephalitis) are a classic cause [5].
  8. Always consider autoimmune encephalitis (especially anti-NMDA-R in young women) as a treatable mimic.
  9. Pathogen-specific clues: temporal lobe features (HSV-1), dermatomal vesicles (VZV), cerebellar ataxia in child (VZV), parkinsonism (JE), rhombencephalitis (Listeria, EV-71), psychiatric onset (anti-NMDA-R), eschar (scrub typhus in HK).
  10. Hong Kong specifics: enteroviruses (EV-71 outbreaks), scrub typhus (endemic), JE (travel-related), TB meningoencephalitis (intermediate burden).

High Yield Summary

  1. The GC lecture DDx for "fever and confusion" [8] is the highest-yield list: CNS infections, non-CNS infections with encephalopathy, sepsis with primary psychiatric disorder, autoimmune encephalitis, inflammatory brain disorders (vasculitis, cerebral lupus), NCSE, thyroid storm.
  2. Encephalitis vs encephalopathy: encephalitis = brain inflammation (CSF pleocytosis, MRI changes); encephalopathy = altered mental state from any cause (including septic, metabolic, toxic, hepatic) — CSF and MRI are normal.
  3. Meningitis vs encephalitis: the distinguishing feature is abnormal cerebral function (altered mental status, personality change, sensory/motor deficits, speech/movement disorders) [3][4][9][10].
  4. Autoimmune encephalitis (anti-NMDA-R) is a critical DDx — treatable, associated with ovarian teratoma, presents with psychiatric symptoms → seizures → movement disorders → autonomic instability [8].
  5. The DDx list from senior notes [3][4][9][10]: meningitis (complicated), brain tumours, brain abscess, syphilis, toxic encephalopathy, metabolic encephalopathy (hypoglycaemia, electrolyte disturbance).
  6. In children with fever + seizure: always consider meningitis and encephalitis as the main concerns [14].
  7. In immunocompromised: expand DDx to include toxoplasmosis, cryptococcus, CMV, PML, primary CNS lymphoma.
  8. Always start empirical IV aciclovir when encephalitis is suspected — do not wait for confirmatory tests.

High Yield Summary

  1. Diagnostic criteria (International Encephalitis Consortium): altered mental status ≥ 24h (major) + ≥ 2 of: fever, seizures, focal deficits, CSF pleocytosis, abnormal MRI, abnormal EEG (minor).
  2. LP is the most important investigation: CSF shows lymphocytic pleocytosis, normal glucose, mildly elevated protein [3][4][8]. Neutrophils may predominate in early stages [8].
  3. HSV DNA PCR in CSF is the standard diagnostic test [17]; can be false negative in first 72h → repeat if high suspicion.
  4. MRI is the neuroimaging modality of choice: temporal lobe hyperintensity = HSV; bilateral thalamic hyperintensity = JE [8].
  5. EEG: PLEDs over temporal region are highly suggestive of HSV encephalitis [3][4][8]. Also detects subclinical seizures/NCSE.
  6. CT brain is for excluding SOL before LP, NOT for diagnosing encephalitis [1][3][4].
  7. Always send: CSF (cell count, glucose with paired BG, protein, HSV/VZV/EV PCR), bloods (CBC, LRFT, glucose, blood C/ST, HIV), throat/stool/urine for viral culture.
  8. Start empirical IV aciclovir 10 mg/kg Q8H immediately — do NOT wait for results [3][4][8]. HSV encephalitis has ~70% mortality if untreated.
  9. Consider autoimmune encephalitis panel (CSF + serum) when viral PCR is negative and clinical picture is suggestive.

High Yield Summary

  1. Start IV aciclovir 10 mg/kg Q8H immediately in ALL patients with suspected viral encephalitis [8] — do NOT wait for PCR. This significantly reduced mortality of HSV encephalitis [8].
  2. Empirical regimen: IV ceftriaxone 2g Q12H + IV aciclovir 10 mg/kg Q8H [2]. Add ampicillin if Listeria risk (age ≥ 50, pregnant, immunocompromised). Add dexamethasone if bacterial meningitis suspected.
  3. HSV encephalitis duration: 2–3 weeks [8]; repeat LP at end of treatment to confirm PCR negativity. Foscarnet for aciclovir-resistant strains.
  4. Autoimmune encephalitis management [8][21]: 1st line = IV methylprednisolone + IVIg + plasmapheresis. 2nd line = rituximab / cyclophosphamide. Tumour resection (ovarian teratoma) in anti-NMDA-R encephalitis associated with faster recovery and reduced relapse [21].
  5. Supportive care is critical throughout: seizure control (antiseizure medications may be needed [8]), ICP management, SIADH monitoring, ICU for refractory seizures/autonomic instability, rehabilitation.
  6. Close liaison with microbiologist, neurologist and neurosurgeon [8].
  7. TB meningoencephalitis: 12 months of anti-TB therapy + 6–8 weeks of dexamethasone.
  8. No specific treatment for JE, most enteroviral, and other viral encephalitis — supportive care only. Prevention (vaccination, mosquito control) is key.

High Yield Summary

  1. Acute complications of encephalitis (mnemonic SHAVES): Seizures/Status epilepticus, Hydrocephalus, Arteritis/stroke, Ventriculitis/local spread, Electrolyte disturbance (SIADH → hyponatraemia), Systemic (DIC, septic shock, DVT, aspiration pneumonia).
  2. Seizures and status epilepticus are classic acute complicationsCNS infections (classically encephalitis) cause SE [5][19]. Non-convulsive SE may be missed without EEG.
  3. SIADH causing hyponatraemia is a common metabolic complication → worsens cerebral oedema and lowers seizure threshold → vicious cycle [6][8].
  4. Cerebrovascular complications: arteritis/thrombophlebitis → cerebral infarction [8]; particularly prominent in TB (26% stroke rate) and VZV vasculopathy.
  5. Hydrocephalus: due to meningeal adhesions blocking CSF reabsorption (communicating) or inflammatory obstruction (obstructive); 80% in TB meningoencephalitis [24].
  6. Long-term sequelae in ~40% of survivors: memory loss (hippocampal damage in HSV), personality change, epilepsy (temporal lobe), motor deficits, SNHL, visual impairment, psychiatric symptoms.
  7. Only 61% survived without sequelae [1] — emphasises the importance of early treatment and rehabilitation.
  8. Anti-NMDA-R encephalitis: early immunotherapy = favourable prognosis [23]; tumour removal (ovarian teratoma) associated with faster recovery and reduced relapse [21].

On this page

No Headings