Flow Cytometry in Haematology: Laboratory Diagnostic Investigations Seminar 3: Investigation of haematological disorders
Flow cytometry is a laboratory technique that uses laser-based detection of fluorescently labeled antibodies to identify and quantify cell surface and intracellular markers, enabling immunophenotyping of normal and abnormal hematopoietic cells for diagnosis and classification of hematological malignancies and other blood disorders.
Flow Cytometry in Haematology — Exam-Ready Lecture Notes
Lecture Map
Flow cytometry is one of the five pillars used to diagnose haematological malignancy. It works by shooting a laser at individual cells in suspension, measuring their physical properties (size, granularity) and — most importantly — which surface and intracellular antigens they express (immunophenotyping). This tells you what lineage the abnormal cells belong to (myeloid vs. B-lymphoid vs. T-lymphoid vs. NK), whether they are clonal (malignant) or reactive, and helps sub-classify the disease. Without flow cytometry, you cannot accurately classify most leukaemias and many lymphomas. [1]
1. Principle of diagnosis of haematological malignancy 2. Principle of flow cytometry 3. Application of flow cytometry in diagnosis and management of haematological malignancy
- Clinical practice: When a CBC + blood film shows abnormal white cells or blasts, flow cytometry is the immediate next step to determine lineage — it directly changes treatment (e.g., ALL vs AML regimens are completely different).
- Exam relevance: HKUMed in-house papers directly test CD marker interpretation, the principle of flow cytometry, and the diagnostic workup sequence for leukaemia. The 2024 Fourth Summative MCQ tested CD markers specifically (Questions 5–8). [7]
1. Principle of Diagnosis of Haematological Malignancy
High Yield — Five Pillars of Diagnosis
The lecture explicitly lists five sequential diagnostic modalities, from bedside to bench. This framework is commonly examined. [1]
| Step | Modality | What It Tells You | Key Point |
|---|---|---|---|
| 1 | Clinical | Symptoms, signs, organ involvement | "You are treating a patient" — always return to clinical context after lab results [1] |
| 2 | Morphology | Peripheral blood film (PBF), bone marrow aspirate/trephine | Is it acute (blasts) or chronic (mature cells)? What do the cells look like? |
| 3 | Immunophenotyping (Flow Cytometry) | "?Normal or not, ?What lineage" [1] | Determines lineage (myeloid/B/T/NK), maturity, clonality |
| 4 | Cytogenetics | Karyotype, FISH | Diagnostic (e.g., t(15;17) = APML) and prognostic |
| 5 | Molecular Studies | PCR, sequencing | Mutations (FLT3, NPM1, BCR-ABL), minimal residual disease (MRD) |
Key exam framing from GC lecture slides: "Flow cytometry – for sub-classification lineage specification" within the workup for suspected acute leukaemia. [6]
- Morphology first: You see blasts on the film → you suspect acute leukaemia. But blasts can look alike under the microscope — you cannot always distinguish AML from ALL by morphology alone.
- Flow cytometry second: It answers the critical question — is this myeloid or lymphoid? Is it B or T? Is it mature or immature? This determines treatment.
- Cytogenetics and molecular: Refine diagnosis, assign prognosis, guide targeted therapy, and later monitor for residual disease.
Peripheral blood smear findings:
- Genuine thrombocytopenia with occasional giant platelets
- Abnormal lymphoid cells: small in size, high N/C ratio, roundish nuclei, clumped chromatin, scanty basophilic agranular cytoplasm, smooth cytoplasmic border
- Diagnosis: Lymphoproliferative disease → Suggest flow cytometry study
Why this case is illustrative: The morphology tells you "these look like abnormal lymphocytes" but cannot definitively classify the disease. Flow cytometry is needed to confirm lineage, assess clonality (kappa/lambda light chain restriction), and determine exact phenotype.
2. Principle of Flow Cytometry
Flow cytometry is a technique where antibody-bound cells are analysed individually in suspension, allowing large numbers of cells to be analysed very quickly, and enabling detection of co-expression of more than one antigen on one cell. [1]
This is the single most important conceptual sentence for the exam: co-expression is key. Unlike immunohistochemistry (IHC), which shows one marker per slide, flow cytometry can show 6–10+ markers simultaneously on each individual cell, creating a "fingerprint" of the cell.
| System | Role | Details from Lecture |
|---|---|---|
| Fluidics | Delivers single cells to the laser | Cells injected into a flowing stream of NaCl saline solution → hydrodynamic focusing ensures cells pass through the laser beam in single suspension, one at a time [1] |
| Optics | Illumination + light collection | A laser hits each cell → light is scattered and fluorescence is emitted → collected by lenses, dichroic mirrors, and filters → directed to detectors [1] |
| Electronics/Detectors | Convert light signals to data | Detectors convert photons to voltage pulses → digitized → plotted as dot plots/histograms [1] |
Two fundamental physical measurements [1]:
| Parameter | What It Measures | Analogy |
|---|---|---|
| Forward Scatter (FSC / FSCH) | Cell SIZE | A bigger cell deflects more light forward |
| Side Scatter (SSC / SSCH) | Cellular COMPLEXITY / GRANULARITY | A cell with more internal granules scatters more light at 90° |
Why this matters: Before you even look at fluorescent antibodies, the forward scatter vs. side scatter plot separates the major WBC populations:
| Cell Population | Forward Scatter (Size) | Side Scatter (Granularity) |
|---|---|---|
| Lymphocytes | Low | Low |
| Monocytes | Intermediate–High | Intermediate |
| Granulocytes (Neutrophils) | Intermediate | High |
This is shown on the lecture's lysed whole blood scatter plot — three distinct clusters appear. [1]
Clinical point: If blasts are present, they typically appear as a distinct cluster (often low side scatter, variable forward scatter) that doesn't fit into the normal lymphocyte/monocyte/granulocyte gates.
- When a cell passes the laser, it generates a voltage pulse [1]
- Low signal height = dim staining (few binding sites) → High signal height = bright staining (many binding sites)
- The emitted fluorescence intensity is proportional to the number of binding sites on the cell for that particular antibody [1]
- Fluorescence data is typically displayed on a log scale (because expression levels vary over several orders of magnitude)
- Antibodies are conjugated to fluorescent dyes (fluorochromes), e.g., FITC (fluorescein isothiocyanate), PE (phycoerythrin), Cy5, Cy7 [1]
- Each fluorochrome emits at a different wavelength when excited by the laser
- Dichroic mirrors and optical filters separate the emitted light by wavelength, directing each color to a different detector [1]
- This allows simultaneous detection of multiple markers on a single cell
| Plot Type | Axes | Interpretation |
|---|---|---|
| Dot plot (two-parameter) | X = one marker, Y = another marker | Each dot = one cell. Clusters show co-expression patterns. |
| Histogram | X = fluorescence intensity, Y = number of events (cell count) | Shows distribution of expression intensity for one marker |
| Gating | Selected region on a plot | "Zooms in" on a specific population (e.g., gate on CD19+ cells to analyze only B cells) |
Gating strategy from the lecture [1]:
- First gate: On the FSC/SSC plot — select the region containing the cells of interest (exclude debris, dead cells)
- CD45 gating: CD45 (leukocyte common antigen) vs SSC — different WBC populations have characteristic CD45 intensity and SSC patterns. Blasts have WEAK CD45 expression [3]
- Lineage-specific gates: e.g., gate on CD19+ cells (B cells) to further assess kappa/lambda light chain expression
3. Application of Flow Cytometry in Diagnosis and Management
High Yield — CD Marker Table
This table is DIRECTLY examined in past papers. The 2024 Fourth Summative MCQ (Questions 5–8) tested MPO, CD34, CD20, and CD56. [7]
| Category | Markers | Notes |
|---|---|---|
| Pan-WBC | CD45 | Present on all WBCs; WEAK on blasts → used for blast gating [3] |
| B-cell lineage | CD19, CD20, CD22, CD79a | CD19 is the most reliable pan-B marker; CD20 is the target of rituximab [3][7] |
| T-cell lineage | CD2, CD3, CD4, CD5, CD7, CD8, TCR | CD3 is lineage-specific for T cells [3] |
| NK-cell lineage | CD11a, CD56, CD57, CD94 | CD56 expresses on NK cells → directly tested in 2024 MCQ Q8 [7] |
| Myeloid (granulocytic) | CD13, CD33, myeloperoxidase (MPO) | MPO is lineage-SPECIFIC for myeloid → 2024 MCQ Q5 [3][7] |
| Myeloid (monocytic) | CD11c, CD14, CD64 | |
| Erythroid | CD235 (glycophorin A) | |
| Megakaryocytic | CD41, CD42b, CD61 | |
| Immaturity markers | CD34, TdT (terminal deoxynucleotidyl transferase) | CD34 identifies stem cell/progenitor stage → 2024 MCQ Q6 [3][7] |
Exam trap: CD5 is a T-cell marker but is aberrantly co-expressed on B cells in CLL/SLL and mantle cell lymphoma. Seeing CD5+/CD19+ on flow = think CLL. [3]
Lineage-specific vs lineage-associated markers [3]:
- Lineage-specific: MPO (myeloid), CD3 (T-cell), CD79a (B-cell) — these define lineage
- Lineage-associated: CD13, CD33 (myeloid), CD19, CD20 (B-cell) — these support lineage but may be aberrantly expressed
This is one of the most powerful applications of flow cytometry in B-cell lymphoproliferative disorders. [1][3]
Why it works:
- Normal B cells express a mixture of kappa and lambda light chains on their surface immunoglobulin (roughly κ:λ ≈ 2:1)
- A clonal (malignant) B-cell population derives from one cell → all express the same light chain (either all kappa OR all lambda)
- Flow cytometry detects this light chain restriction by gating on CD19+ B cells and assessing κ vs λ
From the lecture's flow cytometry plots [1]:
- The CD19+ gated population shows kappa-FITC vs lambda-PE
- If > 90% express one light chain → monoclonal = malignant
- In the case shown: 94.1% lambda+, 4.8% kappa+ → lambda light chain restriction → monoclonal B-cell proliferation [1]
The lecture walks through a case of suspected lymphoproliferative disease with detailed flow cytometry interpretation [1]:
| Marker Combination | Result in the Case | Interpretation |
|---|---|---|
| CD45 vs SSC | Distinct lymphoid cluster | Confirms cells are lymphoid, not myeloid |
| CD19+ | 60% of gated cells | B-cell lineage confirmed |
| CD5 on CD19+ cells | Co-expressed (CD5+/CD19+) | Aberrant T-cell marker on B cells → CLL or mantle cell lymphoma |
| Kappa vs Lambda on CD19+ cells | Lambda restricted (94.1%) | Monoclonal — confirms malignancy |
| IgM on CD19+ cells | 81.3% IgM+ | B cells express surface IgM (consistent with CLL) |
| ZAP70 on CD19+ lymphocytes | 98.5% negative (1.2% positive) | ZAP70 negative → favorable prognosis in CLL |
Putting It Together — This Case Is CLL
Small lymphoid cells + CD19+/CD5+ co-expression + lambda light chain restriction + ZAP70 negative = Chronic Lymphocytic Leukaemia (CLL) with favorable prognosis. This is classic exam material.
| Feature | Flow Cytometry | IHC |
|---|---|---|
| Sample | Fresh, unfixed single cell suspension [3] | Fixed or frozen tissue sections |
| Markers per run | Multiple (≥ 6) simultaneously | One per section |
| Co-expression | Can detect co-expression — major advantage | Cannot demonstrate co-expression |
| Turnaround | Rapid | Slower |
| Quantitation | Superior quantitative capacity [3] | Semi-quantitative |
| Sensitivity | Higher for certain markers (e.g., surface Ig light chains) [3] | Better for tissue architecture |
| Best for | Leukaemias, circulating lymphoma cells | Lymph node biopsies, solid tissue |
Flow cytometry is not just diagnostic — it is used for:
- Sub-classification: e.g., distinguishing B-ALL from T-ALL
- Prognostication: e.g., ZAP70 in CLL (ZAP70+ = worse prognosis) [1], CD34 expression in AML
- Monitoring minimal/measurable residual disease (MRD): After treatment, flow can detect 1 abnormal cell in 10,000 → predicts relapse risk
- Guiding targeted therapy: e.g., CD20+ → rituximab eligible [7]
4. Integration with Diagnostic Workup
From GC 060 (High White Cell Count) — highest yield exam source [6]:
- Morphology (APL, AML, ALL) on PB and BM
- Cytochemistry (MPO and SBB) — AML vs ALL
- Flow cytometry — for sub-classification lineage specification
- Cytogenetics (and FISH) — diagnostic and prognostic information
- Molecular genetics — diagnostic and prognostic information
| Feature | AML | ALL |
|---|---|---|
| Cytochemistry | MPO +ve, SBB +ve [4] | MPO –ve [5] |
| Flow — lineage markers | CD13, CD33, CD117, MPO [4] | B-ALL: CD19, CD22, CD79a; T-ALL: CD3, CD7 [5] |
| Flow — immaturity markers | CD34, HLA-DR | CD34, TdT (TdT very important for ALL diagnosis) [5] |
| Special note | 20% AML co-express lymphoid markers → does NOT change prognosis [4] | Some ALL may co-express myeloid markers → consider mixed phenotype acute leukaemia (MPAL) |
| Leukaemia Type | CBC | PBS |
|---|---|---|
| Acute (AML, ALL) | Pancytopenia (low platelets) | Blasts present |
| Chronic (CML, CLL) | Relatively preserved differentiation | No blasts in CLL; CLL shows smear cells (diagnostic!) |
6. Exam Intelligence
From the 2024 Fourth Summative MCQ [7]:
| Question | Stem | Answer | Rationale |
|---|---|---|---|
| Q5 | "The myeloid marker which is specific for myeloid lineage" | MPO (myeloperoxidase) | CD13 and CD33 are myeloid-associated but not specific. MPO is lineage-DEFINING. |
| Q6 | "The marker that identifies cells in stem cell/progenitor stage" | CD34 | CD34 = hematopoietic stem/progenitor marker. TdT also marks immaturity but is not a "stem cell" marker. |
| Q7 | "The antigen that rituximab targeted" | CD20 | Rituximab = anti-CD20 monoclonal antibody. Used in B-cell lymphomas, CLL, RA, etc. |
| Q8 | "The surface antigen that expresses on NK-cell" | CD56 | CD56 is the classic NK cell marker. Also expressed in some AMLs (poor prognosis). |
Common Mistakes
-
Confusing CD5 with T-cell lineage in CLL: CD5 is a T-cell marker BUT is aberrantly expressed on B cells in CLL/SLL and mantle cell lymphoma. If you see CD19+/CD5+ → think CLL, NOT T-cell disease.
-
Confusing "lineage-specific" vs "lineage-associated": MPO and CD3 are specific (they define the lineage). CD13, CD33, CD19, CD20 are associated (supportive but can be aberrantly expressed).
-
Forgetting that flow cytometry requires FRESH UNFIXED samples: IHC uses fixed tissue. If the sample is fixed in formalin, you CANNOT do flow cytometry.
-
Mixing up forward scatter and side scatter: FSC = size, SSC = granularity/complexity. Lymphocytes = low/low. Granulocytes = medium/high.
-
Thinking CD34 = myeloid marker: CD34 is a stem cell/progenitor marker expressed on immature cells of ANY lineage (both AML and ALL blasts can be CD34+).
"What is the role of flow cytometry in haematological malignancy?" → Model answer: "Flow cytometry performs immunophenotyping on fresh cell suspensions to determine the lineage (myeloid, B-cell, T-cell, NK-cell) and maturity of abnormal cells, detect clonality through surface immunoglobulin light chain restriction, sub-classify disease, guide treatment selection, and monitor measurable residual disease."
"Describe the principle of flow cytometry." → Model answer: "Cells in single-cell suspension pass through a laser beam via hydrodynamic focusing. Forward scatter measures cell size; side scatter measures granularity. Fluorochrome-conjugated antibodies bound to cell surface or intracellular antigens emit fluorescence proportional to the number of binding sites, detected by optical filters and detectors, allowing simultaneous multi-parameter analysis of individual cells."
| # | Question Stem | Expected Answer Points |
|---|---|---|
| 1 | "List the steps in diagnosis of haematological malignancy." | Clinical → Morphology (PBF, BM) → Immunophenotyping (flow cytometry) → Cytogenetics → Molecular studies |
| 2 | "What does forward scatter vs side scatter tell you?" | FSC = cell size, SSC = cellular complexity/granularity. Lymphocytes: low/low; Granulocytes: medium/high |
| 3 | "A CD19+/CD5+ B-cell population with lambda light chain restriction is most consistent with?" | CLL (or mantle cell lymphoma) |
| 4 | "Name 2 advantages of flow cytometry over immunohistochemistry." | (i) Detects co-expression of multiple antigens simultaneously, (ii) Rapid turnaround, (iii) Greater quantitative capacity |
| 5 | "What is the significance of kappa/lambda light chain restriction?" | Indicates monoclonal B-cell proliferation → malignant (vs. polyclonal = reactive) |
| 6 | "Which CD marker is targeted by rituximab?" | CD20 |
| 7 | "MPO is specific for which lineage? What other markers are associated with this lineage?" | MPO = myeloid lineage-specific. Associated markers: CD13, CD33, CD117 |
| 8 | "What does CD34 positivity indicate?" | Stem cell/progenitor stage → the cell is immature (can be seen in both AML and ALL) |
| Feature | CLL | AML | B-ALL |
|---|---|---|---|
| Cell morphology | Small mature lymphocytes, smear cells | Myeloblasts ± Auer rods | Lymphoblasts, no Auer rods |
| Cytochemistry | N/A | MPO+, SBB+ | MPO–ve |
| Key flow markers | CD19+, CD5+, CD23+, weak sIg | CD34+, CD117+, CD13+, CD33+ | CD19+, CD10+, CD22+, TdT+ |
| Clonality | κ or λ light chain restriction | N/A (myeloid, no surface Ig) | May have cytoplasmic Ig |
| ZAP70 significance | ZAP70– = good prognosis; ZAP70+ = poor | N/A | N/A |
High Yield Summary
Flow cytometry is the cornerstone immunophenotyping tool in haematological malignancy diagnosis. Know the five-step diagnostic framework (Clinical → Morphology → Immunophenotyping → Cytogenetics → Molecular). Understand that flow cytometry uses hydrodynamic focusing + laser excitation to measure FSC (size), SSC (granularity), and fluorescence (antigen expression) on individual cells in suspension. Key CD markers: CD45 (pan-WBC, weak on blasts), CD19/20/22 (B-cell), CD3 (T-cell), CD56 (NK), MPO (myeloid-specific), CD34/TdT (immaturity), CD20 (rituximab target). Kappa/lambda light chain restriction proves B-cell clonality = malignancy. Flow cytometry's key advantage over IHC is simultaneous multi-antigen co-expression analysis on fresh unfixed cells. Past paper Q5–8 in 2024 directly tested these markers — learn the table cold.
Active Recall - Flow Cytometry in Haematology
[1] Lecture slides: Laboratory Diagnostic Investigations Seminar_Flow cytometry in haematology.pdf (multiple pages/slides) [2] Senior notes: Maksim Medicine Notes.pdf (p172, Haematological malignancies overview) [3] Senior notes: MBBS Final MB (Medicine) (Felix PY Lai).pdf (p1426–1428, Immunophenotyping and CD marker table) [4] Senior notes: Ryan Ho Haemtology.pdf (p54, AML laboratory features and immunophenotyping) [5] Senior notes: Ryan Ho Haemtology.pdf (p61, ALL laboratory features and immunophenotyping) [6] GC lecture slides: GC 060. High white cell count.pdf (p7, Workup for suspected acute leukaemia) [7] Past papers: 2024 Fourth Summative MCQ.pdf (p38, Questions 5–8 on CD markers)